RNA–Protein interactions for RNA: ENST00000534830.5

CLSTN3-203, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-203ENST00000534830 SCN9AQ15858 1988 aa12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 FANCIQ9NVI1 1328 aa12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 SCARF1Q14162 830 aa12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 TTLL12Q14166 644 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 NOM1Q5C9Z4 860 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 JARID2Q92833 1246 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 STK31Q9BXU1 1019 aa12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 KIAA0100Q14667 2235 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-203ENST00000534830 PSME4Q14997 1843 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 NEURL1BA8MQ27 555 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 G3V3G9 751 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 TM4SF4P48230 202 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 CCDC152Q4G0S7 254 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 DCAF8Q5TAQ9 597 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 TBC1D16Q8TBP0 767 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 EYA3Q99504 573 aa12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 SPINK5Q9NQ38 1064 aaPredicted RBP12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 SCAF8Q9UPN6 1271 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-203ENST00000534830 H7C1W4 665 aa12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 VIL1P09327 827 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 SREBF2Q12772 1141 aa12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 FLIIQ13045 1269 aa12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 INTS3Q68E01 1043 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 TTLL11Q8NHH1 800 aa12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 R3HDMLQ9H3Y0 253 aa12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 TRIM17Q9Y577 477 aa12.9□□□□□ -0.34
CLSTN3-203ENST00000534830 CASP7P55210 303 aa12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 CTSWP56202 376 aa12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 CWF19L2Q2TBE0 894 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 PRAMEF18Q5VWM3 479 aa12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 PLA2G12BQ9BX93 195 aa12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 ZC3H12CQ9C0D7 883 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 COLQQ9Y215 455 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 SPEF2Q9C093 1822 aa12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 CENPFP49454 3210 aa12.89□□□□□ -0.35
CLSTN3-203ENST00000534830 EXOSC9Q06265 439 aaKnown RBP12.88□□□□□ -0.35
CLSTN3-203ENST00000534830 NEXNQ0ZGT2 675 aa12.88□□□□□ -0.35
CLSTN3-203ENST00000534830 SALL2Q9Y467 1007 aaPredicted RBP12.88□□□□□ -0.35
CLSTN3-203ENST00000534830 ZNF521Q96K83 1311 aa12.88□□□□□ -0.35
CLSTN3-203ENST00000534830 EN2P19622 333 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 ZNF280AP59817 542 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 GCKRQ14397 625 aa12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 ANKRD18AQ8IVF6 992 aa12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 CCDC85AQ96PX6 553 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 MYOZ2Q9NPC6 264 aa12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 BSDC1Q9NW68 430 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 GGA1Q9UJY5 639 aa12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 ZNF646O15015 1829 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 PITPNM2Q9BZ72 1349 aa12.87□□□□□ -0.35
CLSTN3-203ENST00000534830 HTTP42858 3142 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 DLL1O00548 723 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 CSF1RP07333 972 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 NF2P35240 595 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 RSBN1LQ6PCB5 846 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 OTOP1Q7RTM1 612 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 FAM9BQ8IZU0 186 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 AGBL3Q8NEM8 1001 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 DNAAF4Q8WXU2 420 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 CFHR5Q9BXR6 569 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 GREM2Q9H772 168 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 MINPP1Q9UNW1 487 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 ZNF609O15014 1411 aa12.86□□□□□ -0.35
CLSTN3-203ENST00000534830 TRIOBPQ9H2D6 2365 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 BRCA2P51587 3418 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 UFL1O94874 794 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 USP17L8P0C7I0 530 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 ATP2B4P23634 1241 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 FKBP5Q13451 457 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 UBE3BQ7Z3V4 1068 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 LINS1Q8NG48 757 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 CDC5LQ99459 802 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 ANKIB1Q9P2G1 1089 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 XDHP47989 1333 aa12.85□□□□□ -0.35
CLSTN3-203ENST00000534830 RBBP6Q7Z6E9 1792 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-203ENST00000534830 WTIPA6NIX2 430 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-203ENST00000534830 ALDH1A1P00352 501 aa12.84□□□□□ -0.35
CLSTN3-203ENST00000534830 PTPN12Q05209 780 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-203ENST00000534830 PRKG1Q13976 671 aa12.84□□□□□ -0.35
CLSTN3-203ENST00000534830 BEND3Q5T5X7 828 aa12.84□□□□□ -0.35
CLSTN3-203ENST00000534830 SZT2Q5T011 3432 aa12.83□□□□□ -0.36
CLSTN3-203ENST00000534830 ARMC9Q7Z3E5 817 aa12.83□□□□□ -0.36
CLSTN3-203ENST00000534830 SLC17A8Q8NDX2 589 aa12.83□□□□□ -0.36
CLSTN3-203ENST00000534830 TMEM106CQ9BVX2 250 aa12.83□□□□□ -0.36
CLSTN3-203ENST00000534830 MYH16Q9H6N6 1097 aa12.83□□□□□ -0.36
CLSTN3-203ENST00000534830 PTPN22Q9Y2R2 807 aa12.83□□□□□ -0.36
CLSTN3-203ENST00000534830 CEP290O15078 2479 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 A0A1B0GUL6 1792 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 F6X3S4 739 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 ITGA6P23229 1130 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 NBPF9Q3BBW0 867 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 SPRYD7Q5W111 196 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 PODNQ7Z5L7 613 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 ERO1AQ96HE7 468 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 GMLQ99445 158 aa12.82□□□□□ -0.36
CLSTN3-203ENST00000534830 MED23Q9ULK4 1368 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 USP17L3A6NCW0 530 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 USP17L4A6NCW7 530 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 CCT4P50991 539 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms