RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 LRRC24Q50LG9 513 aa18.77■□□□□ 0.6
CPSF1-208ENST00000532560 SMC1BQ8NDV3 1235 aa18.77■□□□□ 0.6
CPSF1-208ENST00000532560 GPRC5DQ9NZD1 345 aa18.77■□□□□ 0.6
CPSF1-208ENST00000532560 EYA2O00167 538 aa18.76■□□□□ 0.59
CPSF1-208ENST00000532560 PLIN1O60240 522 aa18.76■□□□□ 0.59
CPSF1-208ENST00000532560 VIL1P09327 827 aaKnown RBP18.76■□□□□ 0.59
CPSF1-208ENST00000532560 METTL24Q5JXM2 366 aa18.76■□□□□ 0.59
CPSF1-208ENST00000532560 PNMA8AQ86V59 439 aaPredicted RBP18.76■□□□□ 0.59
CPSF1-208ENST00000532560 VGLL2Q8N8G2 317 aa18.76■□□□□ 0.59
CPSF1-208ENST00000532560 PANK1Q8TE04 598 aa18.76■□□□□ 0.59
CPSF1-208ENST00000532560 KCNQ5Q9NR82 932 aa18.76■□□□□ 0.59
CPSF1-208ENST00000532560 CEP350Q5VT06 3117 aa18.76■□□□□ 0.59
CPSF1-208ENST00000532560 ZNF646O15015 1829 aaPredicted RBP18.76■□□□□ 0.59
CPSF1-208ENST00000532560 CIAO1O76071 339 aa18.75■□□□□ 0.59
CPSF1-208ENST00000532560 EPS15P42566 896 aa18.75■□□□□ 0.59
CPSF1-208ENST00000532560 LDHDQ86WU2 507 aa18.75■□□□□ 0.59
CPSF1-208ENST00000532560 DPF2Q92785 391 aa18.75■□□□□ 0.59
CPSF1-208ENST00000532560 COPRSQ9NQ92 184 aa18.75■□□□□ 0.59
CPSF1-208ENST00000532560 ZBTB7BO15156 539 aaPredicted RBP18.74■□□□□ 0.59
CPSF1-208ENST00000532560 SRGAP3O43295 1099 aa18.74■□□□□ 0.59
CPSF1-208ENST00000532560 POTEIP0CG38 1075 aa18.74■□□□□ 0.59
CPSF1-208ENST00000532560 POTEJP0CG39 1038 aa18.74■□□□□ 0.59
CPSF1-208ENST00000532560 ATG9AQ7Z3C6 839 aa18.74■□□□□ 0.59
CPSF1-208ENST00000532560 ZNF804AQ7Z570 1209 aa18.74■□□□□ 0.59
CPSF1-208ENST00000532560 ADARB2Q9NS39 739 aaKnown RBP18.74■□□□□ 0.59
CPSF1-208ENST00000532560 USP17L3A6NCW0 530 aa18.73■□□□□ 0.59
CPSF1-208ENST00000532560 USP17L4A6NCW7 530 aa18.73■□□□□ 0.59
CPSF1-208ENST00000532560 PDE8BO95263 885 aa18.73■□□□□ 0.59
CPSF1-208ENST00000532560 EAPPQ56P03 285 aaPredicted RBP18.73■□□□□ 0.59
CPSF1-208ENST00000532560 CHADLQ6NUI6 762 aa18.73■□□□□ 0.59
CPSF1-208ENST00000532560 USP50Q70EL3 339 aaPredicted RBP18.73■□□□□ 0.59
CPSF1-208ENST00000532560 USP17L1Q7RTZ2 530 aa18.73■□□□□ 0.59
CPSF1-208ENST00000532560 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.73■□□□□ 0.59
CPSF1-208ENST00000532560 ZBTB12Q9Y330 459 aaPredicted RBP18.73■□□□□ 0.59
CPSF1-208ENST00000532560 MVPQ14764 893 aaKnown RBP18.72■□□□□ 0.59
CPSF1-208ENST00000532560 RSBN1LQ6PCB5 846 aaPredicted RBP18.72■□□□□ 0.59
CPSF1-208ENST00000532560 MICALL2Q8IY33 904 aa18.72■□□□□ 0.59
CPSF1-208ENST00000532560 AGBL3Q8NEM8 1001 aa18.72■□□□□ 0.59
CPSF1-208ENST00000532560 SIL1Q9H173 461 aa18.72■□□□□ 0.59
CPSF1-208ENST00000532560 CD209Q9NNX6 404 aa18.72■□□□□ 0.59
CPSF1-208ENST00000532560 PA2G4Q9UQ80 394 aaKnown RBP18.72■□□□□ 0.59
CPSF1-208ENST00000532560 IL1R1P14778 569 aa18.71■□□□□ 0.59
CPSF1-208ENST00000532560 IL15P40933 162 aaPredicted RBP18.71■□□□□ 0.59
CPSF1-208ENST00000532560 PUM3Q15397 648 aaKnown RBP18.71■□□□□ 0.59
CPSF1-208ENST00000532560 DACT2Q5SW24 774 aa18.71■□□□□ 0.59
CPSF1-208ENST00000532560 STRIP1Q5VSL9 837 aa18.71■□□□□ 0.59
CPSF1-208ENST00000532560 CNOT7Q9UIV1 285 aaKnown RBP18.71■□□□□ 0.59
CPSF1-208ENST00000532560 PNMA6EA0A0J9YXQ4 647 aa18.7■□□□□ 0.58
CPSF1-208ENST00000532560 HSPA6P17066 643 aa18.7■□□□□ 0.58
CPSF1-208ENST00000532560 PDE3AQ14432 1141 aa18.7■□□□□ 0.58
CPSF1-208ENST00000532560 GMLQ99445 158 aa18.7■□□□□ 0.58
CPSF1-208ENST00000532560 DDX19BQ9UMR2 479 aa18.7■□□□□ 0.58
CPSF1-208ENST00000532560 GTF3C3Q9Y5Q9 886 aa18.7■□□□□ 0.58
CPSF1-208ENST00000532560 MYO3BQ8WXR4 1341 aa18.7■□□□□ 0.58
CPSF1-208ENST00000532560 SHTN1A0MZ66 631 aa18.69■□□□□ 0.58
CPSF1-208ENST00000532560 H7C1D1 291 aa18.69■□□□□ 0.58
CPSF1-208ENST00000532560 FGFR2P21802 821 aa18.69■□□□□ 0.58
CPSF1-208ENST00000532560 POLA2Q14181 598 aa18.69■□□□□ 0.58
CPSF1-208ENST00000532560 C1orf115Q9H7X2 142 aa18.69■□□□□ 0.58
CPSF1-208ENST00000532560 IFIT1P09914 478 aaKnown RBP18.68■□□□□ 0.58
CPSF1-208ENST00000532560 HIBADHP31937 336 aaKnown RBP18.68■□□□□ 0.58
CPSF1-208ENST00000532560 GYG1P46976 350 aa18.68■□□□□ 0.58
CPSF1-208ENST00000532560 ZNF280AP59817 542 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-208ENST00000532560 TTLL5Q6EMB2 1281 aa18.68■□□□□ 0.58
CPSF1-208ENST00000532560 TRPM4Q8TD43 1214 aa18.68■□□□□ 0.58
CPSF1-208ENST00000532560 SSH3Q8TE77 659 aa18.68■□□□□ 0.58
CPSF1-208ENST00000532560 FAM84BQ96KN1 310 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-208ENST00000532560 CEP126Q9P2H0 1117 aa18.68■□□□□ 0.58
CPSF1-208ENST00000532560 COG6Q9Y2V7 657 aa18.68■□□□□ 0.58
CPSF1-208ENST00000532560 ARAP2Q8WZ64 1704 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 SLC5A1P13866 664 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 GTF2IP78347 998 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 ATP8B2P98198 1209 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 C20orf194Q5TEA3 1177 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 FBXO33Q7Z6M2 555 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 LPIN2Q92539 896 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 FBXW7Q969H0 707 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 CHMP4BQ9H444 224 aaKnown RBP18.67■□□□□ 0.58
CPSF1-208ENST00000532560 CLEC11AQ9Y240 323 aa18.67■□□□□ 0.58
CPSF1-208ENST00000532560 USP17L8P0C7I0 530 aa18.66■□□□□ 0.58
CPSF1-208ENST00000532560 ATP2B3Q16720 1220 aa18.66■□□□□ 0.58
CPSF1-208ENST00000532560 CAVIN4Q5BKX8 364 aa18.66■□□□□ 0.58
CPSF1-208ENST00000532560 CEP85Q6P2H3 762 aa18.66■□□□□ 0.58
CPSF1-208ENST00000532560 TDRD7Q8NHU6 1098 aaKnown RBP18.66■□□□□ 0.58
CPSF1-208ENST00000532560 SASH1O94885 1247 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 MMP14P50281 582 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 HIRAP54198 1017 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-208ENST00000532560 FKBP1AP62942 108 aaKnown RBP18.65■□□□□ 0.58
CPSF1-208ENST00000532560 MAP1SQ66K74 1059 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-208ENST00000532560 SAMD7Q7Z3H4 446 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 VPS37DQ86XT2 251 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 ZC3H15Q8WU90 426 aaKnown RBP18.65■□□□□ 0.58
CPSF1-208ENST00000532560 MXD3Q9BW11 206 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 ZBTB40Q9NUA8 1239 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 PGAP2Q9UHJ9 254 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 FAM205AQ6ZU69 1335 aa18.65■□□□□ 0.58
CPSF1-208ENST00000532560 APLP1P51693 650 aa18.64■□□□□ 0.57
CPSF1-208ENST00000532560 KIF4BQ2VIQ3 1234 aa18.64■□□□□ 0.57
CPSF1-208ENST00000532560 PASKQ96RG2 1323 aa18.64■□□□□ 0.57
CPSF1-208ENST00000532560 ITGBL1O95965 494 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms