RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	WTIP	A6NIX2	430 aa	Predicted RBP	11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	SNAP23	O00161	211 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	RIMBP2	O15034	1052 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	PPIP5K2	O43314	1243 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	RAB11FIP3	O75154	756 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	LMNB1	P20700	586 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	LTBP1	Q14766	1721 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	HSP90AB4P	Q58FF6	505 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	EYA3	Q99504	573 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	RNF181	Q9P0P0	153 aa		11.56	□□□□□ -0.56
NXF1-209	ENST00000531474	APBB1	O00213	710 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	PDE8B	O95263	885 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	IARS	P41252	1262 aa	Known RBP	11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	PRELP	P51888	382 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	TFCP2	Q12800	502 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	PUM3	Q15397	648 aa	Known RBP	11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	AOC3	Q16853	763 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	WASHC4	Q2M389	1173 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	C9orf131	Q5VYM1	1079 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	LARGE2	Q8N3Y3	721 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	VGLL2	Q8N8G2	317 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	FER1L6	Q2WGJ9	1857 aa		11.55	□□□□□ -0.56
NXF1-209	ENST00000531474	SASH1	O94885	1247 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	KLRK1	P26718	216 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	UBE4A	Q14139	1066 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	ATP2B3	Q16720	1220 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	CASC1	Q6TDU7	716 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	ERC1	Q8IUD2	1116 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	PLEKHM2	Q8IWE5	1019 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	TBC1D32	Q96NH3	1257 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474	MED23	Q9ULK4	1368 aa		11.54	□□□□□ -0.56
NXF1-209	ENST00000531474		G3V3G9	751 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	IFIT1	P09914	478 aa	Known RBP	11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	SLC5A1	P13866	664 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	KIAA2012	Q0VF49	1180 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	DOK7	Q18PE1	504 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	DCAF8	Q5TAQ9	597 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	NIM1K	Q8IY84	436 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	JDP2	Q8WYK2	163 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	LRRCC1	Q9C099	1032 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	BCL11A	Q9H165	835 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	OSBPL3	Q9H4L5	887 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474		A0A1B0GUL6	1792 aa		11.53	□□□□□ -0.56
NXF1-209	ENST00000531474	TXNRD3	Q86VQ6	643 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	RHPN1	Q8TCX5	695 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	LPIN2	Q92539	896 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	C22orf23	Q9BZE7	217 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	VPS33B	Q9H267	617 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	DBNDD1	Q9H9R9	158 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	AKAP2	Q9Y2D5	859 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	COL4A5	P29400	1685 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	ZNF609	O15014	1411 aa		11.52	□□□□□ -0.57
NXF1-209	ENST00000531474	ECE2	O60344	883 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	CDC45	O75419	566 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	SEC24B	O95487	1268 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	FGFR2	P21802	821 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	GYG1	P46976	350 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	TNNI3K	Q59H18	835 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	C15orf52	Q6ZUT6	534 aa	Known RBP	11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	ZNF804A	Q7Z570	1209 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	VPS37D	Q86XT2	251 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	KIF1BP	Q96EK5	621 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	NEUROD6	Q96NK8	337 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	IL1RAPL2	Q9NP60	686 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	FPGT-TNNI3K	V9GXZ4	949 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474	IRS2	Q9Y4H2	1338 aa		11.51	□□□□□ -0.57
NXF1-209	ENST00000531474		A0A1B0GUL7	405 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	ADORA1	P30542	326 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	TIMM10	P62072	90 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	CAVIN4	Q5BKX8	364 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	GORAB	Q5T7V8	394 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	TTC22	Q5TAA0	569 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	GPR108	Q9NPR9	543 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	ZNRF3	Q9ULT6	936 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	AOX1	Q06278	1338 aa		11.5	□□□□□ -0.57
NXF1-209	ENST00000531474	TIAM2	Q8IVF5	1701 aa		11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	SMARCA5	O60264	1052 aa	Predicted RBP	11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	HIBADH	P31937	336 aa	Known RBP	11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	RBM25	P49756	843 aa	Known RBP	11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	BCAM	P50895	628 aa		11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	EIF6	P56537	245 aa	Known RBP	11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	AACS	Q86V21	672 aa		11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	CLASRP	Q8N2M8	674 aa	Known RBP	11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	IL27	Q8NEV9	243 aa		11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	FBXW7	Q969H0	707 aa		11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	XAGE2	Q96GT9	111 aa		11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	FAM84B	Q96KN1	310 aa	Predicted RBP	11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	COA1	Q9GZY4	146 aa		11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.49	□□□□□ -0.57
NXF1-209	ENST00000531474	YDJC	A8MPS7	323 aa		11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	RAD17	O75943	681 aa		11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	IFIT2	P09913	472 aa	Known RBP	11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	ATXN8OS	P0DMR3	200 aa		11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	MFAP1	P55081	439 aa	Known RBP	11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	FBXO33	Q7Z6M2	555 aa		11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	EAF2	Q96CJ1	260 aa	Predicted RBP	11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	DBNDD2	Q9BQY9	259 aa		11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	CD209	Q9NNX6	404 aa		11.48	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms