RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 CENPBP07199 599 aaPredicted RBP5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 GTF2IP78347 998 aa5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 CXCL9Q07325 125 aa5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 CHAF1AQ13111 956 aaPredicted RBP5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 ATP2B3Q16720 1220 aa5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 RBM26Q5T8P6 1007 aaKnown RBP5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 RPAP2Q8IXW5 612 aaPredicted RBP5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 CCDC8Q9H0W5 538 aaPredicted RBP5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 RRAGCQ9HB90 399 aa5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 LEMD3Q9Y2U8 911 aa5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 IRS2Q9Y4H2 1338 aa5.7□□□□□ -1.5
CHMP4A-202ENST00000524955 LRRC37AA6NMS7 1700 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 F8W031 263 aaPredicted RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 FZD9O00144 591 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 CIAO1O76071 339 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 SLC5A1P13866 664 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 FGFR2P21802 821 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 IL15P40933 162 aaPredicted RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 EPS15P42566 896 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 PHKA1P46020 1223 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 GMPSP49915 693 aaPredicted RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 EIF6P56537 245 aaKnown RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 PUM3Q15397 648 aaKnown RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 GRIK5Q16478 980 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 CIAPIN1Q6FI81 312 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 B4GALNT3Q6L9W6 998 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 PI16Q6UXB8 463 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 VPS37DQ86XT2 251 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 C16orf71Q8IYS4 520 aaPredicted RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 ZNF784Q8NCA9 323 aaPredicted RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 EAF2Q96CJ1 260 aaPredicted RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 FAM84BQ96KN1 310 aaPredicted RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 DBNDD2Q9BQY9 259 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 CD209Q9NNX6 404 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 SNRKQ9NRH2 765 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 ZNRF3Q9ULT6 936 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 SCAF8Q9UPN6 1271 aaKnown RBP5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 NDUFB9Q9Y6M9 179 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 ARFGEF1Q9Y6D6 1849 aa5.69□□□□□ -1.5
CHMP4A-202ENST00000524955 MED23Q9ULK4 1368 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 GLTPD2A6NH11 291 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 POTECB2RU33 542 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 HMMRO75330 724 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 FRAT2O75474 233 aaPredicted RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 IFIT1P09914 478 aaKnown RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 POTEIP0CG38 1075 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 POTEJP0CG39 1038 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 HIBADHP31937 336 aaKnown RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 UBE4AQ14139 1066 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 SCARF1Q14162 830 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 GRIPAP1Q4V328 841 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 EAPPQ56P03 285 aaPredicted RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 TNNI3KQ59H18 835 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 CAVIN4Q5BKX8 364 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 GORABQ5T7V8 394 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 TSHZ3Q63HK5 1081 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 CCDC102BQ68D86 513 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 DPY19L2Q6NUT2 758 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 DLK2Q6UY11 383 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 ZNF804AQ7Z570 1209 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 AACSQ86V21 672 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 SKAP1Q86WV1 359 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 CERS5Q8N5B7 392 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 RHPN1Q8TCX5 695 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 OTUD7AQ8TE49 926 aaPredicted RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 LPIN2Q92539 896 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 XAGE2Q96GT9 111 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 COA1Q9GZY4 146 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 CHMP4BQ9H444 224 aaKnown RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 GPBP1L1Q9HC44 474 aaPredicted RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 NOP58Q9Y2X3 529 aaKnown RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 PCDHAC2Q9Y5I4 1007 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 FPGT-TNNI3KV9GXZ4 949 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 FER1L6Q2WGJ9 1857 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 ASTN2O75129 1339 aaPredicted RBP5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 LTBP1Q14766 1721 aa5.68□□□□□ -1.5
CHMP4A-202ENST00000524955 ZNF609O15014 1411 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 USP17L3A6NCW0 530 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 USP17L4A6NCW7 530 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 EGFRP00533 1210 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 SCNN1DP51172 638 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 TBC1D10BQ4KMP7 808 aaPredicted RBP5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 ANKRD45Q5TZF3 282 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 TTLL5Q6EMB2 1281 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 TBC1D9Q6ZT07 1266 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 USP17L1Q7RTZ2 530 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 SAMD7Q7Z3H4 446 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 FBXO33Q7Z6M2 555 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 KIAA0825Q8IV33 1275 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 MICALL2Q8IY33 904 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 TDRD7Q8NHU6 1098 aaKnown RBP5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 TRPM4Q8TD43 1214 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 EDC3Q96F86 508 aaKnown RBP5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 DBNLQ9UJU6 430 aaKnown RBP5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 MYH3P11055 1940 aa5.67□□□□□ -1.5
CHMP4A-202ENST00000524955 COL1A1P02452 1464 aaPredicted RBP5.66□□□□□ -1.5
CHMP4A-202ENST00000524955 TIAM2Q8IVF5 1701 aa5.66□□□□□ -1.5
CHMP4A-202ENST00000524955 MAP4K4O95819 1239 aaPredicted RBP5.66□□□□□ -1.5
CHMP4A-202ENST00000524955 NEFLP07196 543 aa5.66□□□□□ -1.5
CHMP4A-202ENST00000524955 VIL1P09327 827 aaKnown RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms