RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 DCTN4Q9UJW0 460 aa5.88□□□□□ -1.47
HMGB1P41-201ENST00000520234 PDE3BQ13370 1112 aa5.87□□□□□ -1.47
HMGB1P41-201ENST00000520234 NUDT16Q96DE0 195 aaKnown RBP5.87□□□□□ -1.47
HMGB1P41-201ENST00000520234 ASIC4Q96FT7 647 aa5.87□□□□□ -1.47
HMGB1P41-201ENST00000520234 RBCK1Q9BYM8 510 aa5.87□□□□□ -1.47
HMGB1P41-201ENST00000520234 CCDC87Q9NVE4 849 aa5.87□□□□□ -1.47
HMGB1P41-201ENST00000520234 POLIQ9UNA4 740 aa5.87□□□□□ -1.47
HMGB1P41-201ENST00000520234 KCNMB2Q9Y691 235 aa5.87□□□□□ -1.47
HMGB1P41-201ENST00000520234 UBAP1LF5GYI3 381 aa5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 XYLBO75191 536 aa5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 GRNP28799 593 aaKnown RBP5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 TMCO4Q5TGY1 634 aa5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 PDE12Q6L8Q7 609 aaKnown RBP5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 XKR5Q6UX68 686 aa5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 GJD3Q8N144 294 aa5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 PNMA5Q96PV4 448 aa5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 GSX2Q9BZM3 304 aa5.86□□□□□ -1.47
HMGB1P41-201ENST00000520234 MAP3K6O95382 1288 aa5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 MAPK1P28482 360 aa5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 CCDC27Q2M243 656 aa5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 RAB44Q7Z6P3 723 aaPredicted RBP5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 ZSCAN29Q8IWY8 852 aaPredicted RBP5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 NUDT8Q8WV74 236 aa5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 AKTIPQ9H8T0 292 aa5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 SLC6A14Q9UN76 642 aa5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 RAXQ9Y2V3 346 aa5.85□□□□□ -1.47
HMGB1P41-201ENST00000520234 NEFLP07196 543 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 TRIP4Q15650 581 aaPredicted RBP5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 C8orf34Q49A92 452 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 MSL1Q68DK7 614 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 NLRP13Q86W25 1043 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 ZDHHC13Q8IUH4 622 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 TMC1Q8TDI8 760 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 DMRTB1Q96MA1 342 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 USP20Q9Y2K6 914 aa5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.84□□□□□ -1.47
HMGB1P41-201ENST00000520234 ERCC3P19447 782 aa5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 ZNF438Q7Z4V0 828 aa5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 BHMTQ93088 406 aa5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 ASB16Q96NS5 453 aa5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 FAM129BQ96TA1 746 aa5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 UBE2OQ9C0C9 1292 aaKnown RBP5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 GGNBP2Q9H3C7 697 aa5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 ELP3Q9H9T3 547 aa5.83□□□□□ -1.48
HMGB1P41-201ENST00000520234 SASH3O75995 380 aa5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 RARAP10276 462 aa5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 NFKB1P19838 968 aa5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 TARSP26639 723 aaKnown RBP5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 PCSK7Q16549 785 aa5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 TTC39BQ5VTQ0 682 aaPredicted RBP5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 PSAPL1Q6NUJ1 521 aa5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 PMEPA1Q969W9 287 aa5.82□□□□□ -1.48
HMGB1P41-201ENST00000520234 DBX1A6NMT0 343 aa5.81□□□□□ -1.48
HMGB1P41-201ENST00000520234 RGS9O75916 674 aaPredicted RBP5.81□□□□□ -1.48
HMGB1P41-201ENST00000520234 TMC7Q7Z402 723 aa5.81□□□□□ -1.48
HMGB1P41-201ENST00000520234 ALKBH8Q96BT7 664 aaKnown RBP5.81□□□□□ -1.48
HMGB1P41-201ENST00000520234 ABI2Q9NYB9 513 aaPredicted RBP5.81□□□□□ -1.48
HMGB1P41-201ENST00000520234 TLR7Q9NYK1 1049 aaKnown RBP5.81□□□□□ -1.48
HMGB1P41-201ENST00000520234 PSAPP07602 524 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 HOXD8P13378 290 aaPredicted RBP5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 SOX18P35713 384 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 TBC1D8BQ0IIM8 1120 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 COL19A1Q14993 1142 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 KRT25Q7Z3Z0 450 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 ABI1Q8IZP0 508 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 TMEM130Q8N3G9 435 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 OR13H1Q8NG92 308 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 SNX29Q8TEQ0 813 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 ZFATQ9P243 1243 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 STOML1Q9UBI4 398 aa5.8□□□□□ -1.48
HMGB1P41-201ENST00000520234 GPR182O15218 404 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 TREHO43280 583 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 MMP20O60882 483 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 TNFRSF21O75509 655 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 IGHA2P01877 340 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 NRLP54845 237 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 MFAP1P55081 439 aaKnown RBP5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 PLCB3Q01970 1234 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 PLAURQ03405 335 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 DNAJC14Q6Y2X3 702 aaPredicted RBP5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 Q6ZS46 218 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 DHX32Q7L7V1 743 aaKnown RBP5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 TMEM63CQ9P1W3 806 aa5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 CCDC9Q9Y3X0 531 aaKnown RBP5.79□□□□□ -1.48
HMGB1P41-201ENST00000520234 ANKRD33BA6NCL7 494 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 A6NHS1 94 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 DLL1O00548 723 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 PHACTR2O75167 634 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 JUNBP17275 347 aaPredicted RBP5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 NFIAQ12857 509 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 DSC3Q14574 896 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 CBLL1Q75N03 491 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 TRPM4Q8TD43 1214 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 NIF3L1Q9GZT8 377 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 MRPL18Q9H0U6 180 aaKnown RBP5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 DNAJC25Q9H1X3 360 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 NAGPAQ9UK23 515 aa5.78□□□□□ -1.48
HMGB1P41-201ENST00000520234 PRR19A6NJB7 356 aa5.77□□□□□ -1.49
HMGB1P41-201ENST00000520234 F8W735 103 aaPredicted RBP5.77□□□□□ -1.49
HMGB1P41-201ENST00000520234 ITGB5P18084 799 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms