RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 COL4A5P29400 1685 aa9.63□□□□□ -0.87
LIMCH1-222ENST00000515847 XDHP47989 1333 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 MROH5Q6ZUA9 1318 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 IARSP41252 1262 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 KCNJ4P48050 445 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 GPSM2P81274 684 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 DPP8Q6V1X1 898 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 MPNDQ8N594 471 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 PANK1Q8TE04 598 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 COG6Q9Y2V7 657 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 A0A1B0GUL6 1792 aa9.62□□□□□ -0.87
LIMCH1-222ENST00000515847 SRGAP3O43295 1099 aa9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 PLIN1O60240 522 aa9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 ATP2B4P23634 1241 aa9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 LDHAL6AQ6ZMR3 332 aa9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 ERC1Q8IUD2 1116 aa9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 RPAP2Q8IXW5 612 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 ZNF784Q8NCA9 323 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 ZNF594Q96JF6 807 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 RTFDC1Q9BY42 306 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 ANKIB1Q9P2G1 1089 aa9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 GGA1Q9UJY5 639 aa9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 NSFL1CQ9UNZ2 370 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-222ENST00000515847 G3V3G9 751 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 ZBTB7BO15156 539 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 PPIP5K2O43314 1243 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 CIAO1O76071 339 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 UFL1O94874 794 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 OS9Q13438 667 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 GSE1Q14687 1217 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 AOC3Q16853 763 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 LARGE2Q8N3Y3 721 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 ZNF526Q8TF50 670 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 GPR101Q96P66 508 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 PODXL2Q9NZ53 605 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 POLLQ9UGP5 575 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 MINPP1Q9UNW1 487 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 LEMD3Q9Y2U8 911 aa9.6□□□□□ -0.87
LIMCH1-222ENST00000515847 C6orf229H3BNL8 230 aa9.59□□□□□ -0.87
LIMCH1-222ENST00000515847 IL15P40933 162 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-222ENST00000515847 TBC1D16Q8TBP0 767 aa9.59□□□□□ -0.87
LIMCH1-222ENST00000515847 JDP2Q8WYK2 163 aa9.59□□□□□ -0.87
LIMCH1-222ENST00000515847 PCDHB8Q9UN66 801 aa9.59□□□□□ -0.87
LIMCH1-222ENST00000515847 ZNF541Q9H0D2 1346 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 WTIPA6NIX2 430 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 EYA2O00167 538 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 CHRNDQ07001 517 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 KIAA2012Q0VF49 1180 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 G3BP1Q13283 466 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 METTL24Q5JXM2 366 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 C20orf194Q5TEA3 1177 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 NIM1KQ8IY84 436 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 KLHDC4Q8TBB5 520 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 PUS3Q9BZE2 481 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 COPRSQ9NQ92 184 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 ZBTB40Q9NUA8 1239 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 AKAP2Q9Y2D5 859 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 SUPT16HQ9Y5B9 1047 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 MED23Q9ULK4 1368 aa9.58□□□□□ -0.88
LIMCH1-222ENST00000515847 FZD9O00144 591 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 RIMBP2O15034 1052 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 IFIT1P09914 478 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 RFX5P48382 616 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 ATP8B2P98198 1209 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 PUM3Q15397 648 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 WASHC4Q2M389 1173 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 LRRC24Q50LG9 513 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 CEP85Q6P2H3 762 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 HELBQ8NG08 1087 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 ZC3H12CQ9C0D7 883 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 C1orf115Q9H7X2 142 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 CEP126Q9P2H0 1117 aa9.57□□□□□ -0.88
LIMCH1-222ENST00000515847 GLTPD2A6NH11 291 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 SNAP23O00161 211 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 TAF5LO75529 589 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 SLC5A1P13866 664 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 KLRK1P26718 216 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 EIF6P56537 245 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 PTPN12Q05209 780 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 UBE4AQ14139 1066 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 CAVIN4Q5BKX8 364 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 ZNF804AQ7Z570 1209 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 VPS37DQ86XT2 251 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 SSH3Q8TE77 659 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 DBNDD1Q9H9R9 158 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 GPBP1L1Q9HC44 474 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 NMRK2Q9NPI5 230 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 RIPOR2Q9Y4F9 1068 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 WDR90Q96KV7 1748 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 ZNF804BA4D1E1 1349 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 KDM2BQ8NHM5 1336 aa9.56□□□□□ -0.88
LIMCH1-222ENST00000515847 SCN9AQ15858 1988 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 POTEMA6NI47 508 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 YDJCA8MPS7 323 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 ECE2O60344 883 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 RAB11FIP3O75154 756 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 DDNO94850 711 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 DOK7Q18PE1 504 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 DPY19L2Q6NUT2 758 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 IFNLR1Q8IU57 520 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms