RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 TTLL6Q8N841 843 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 PI4K2BQ8TCG2 481 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 C7orf43Q8WVR3 580 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 PODXL2Q9NZ53 605 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 ANKIB1Q9P2G1 1089 aa15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 COL11A2P13942 1736 aaPredicted RBP15.9■□□□□ 0.14
LIMCH1-220ENST00000514190 WTIPA6NIX2 430 aaPredicted RBP15.89■□□□□ 0.13
LIMCH1-220ENST00000514190 KCNJ4P48050 445 aa15.89■□□□□ 0.13
LIMCH1-220ENST00000514190 SLC51AQ86UW1 340 aa15.89■□□□□ 0.13
LIMCH1-220ENST00000514190 TMX4Q9H1E5 349 aaPredicted RBP15.89■□□□□ 0.13
LIMCH1-220ENST00000514190 NSFL1CQ9UNZ2 370 aaKnown RBP15.89■□□□□ 0.13
LIMCH1-220ENST00000514190 ZNF804BA4D1E1 1349 aa15.89■□□□□ 0.13
LIMCH1-220ENST00000514190 GSPT1P15170 499 aaKnown RBP15.88■□□□□ 0.13
LIMCH1-220ENST00000514190 ATP2B4P23634 1241 aa15.88■□□□□ 0.13
LIMCH1-220ENST00000514190 CCDC158Q5M9N0 1113 aa15.88■□□□□ 0.13
LIMCH1-220ENST00000514190 CC2D2BQ6DHV5 1058 aa15.88■□□□□ 0.13
LIMCH1-220ENST00000514190 C15orf52Q6ZUT6 534 aaKnown RBP15.87■□□□□ 0.13
LIMCH1-220ENST00000514190 MPNDQ8N594 471 aa15.87■□□□□ 0.13
LIMCH1-220ENST00000514190 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.87■□□□□ 0.13
LIMCH1-220ENST00000514190 ZNF512BQ96KM6 892 aaPredicted RBP15.87■□□□□ 0.13
LIMCH1-220ENST00000514190 GGA1Q9UJY5 639 aa15.87■□□□□ 0.13
LIMCH1-220ENST00000514190 UQCRFS1P1P0C7P4 283 aa15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 TTC39AQ5SRH9 613 aa15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 CCDC102BQ68D86 513 aa15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 OLFM4Q6UX06 510 aa15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 FBXO33Q7Z6M2 555 aa15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 TBC1D16Q8TBP0 767 aa15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 FAM84BQ96KN1 310 aaPredicted RBP15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 BOLA2Q9H3K6 86 aa15.86■□□□□ 0.13
LIMCH1-220ENST00000514190 SPEF2Q9C093 1822 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 UFL1O94874 794 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 SDSP20132 328 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 PHKA1P46020 1223 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 BCAMP50895 628 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 GRIPAP1Q4V328 841 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 CAVIN4Q5BKX8 364 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 POLLQ9UGP5 575 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 IRS2Q9Y4H2 1338 aa15.85■□□□□ 0.13
LIMCH1-220ENST00000514190 C6orf229H3BNL8 230 aa15.84■□□□□ 0.13
LIMCH1-220ENST00000514190 KLRK1P26718 216 aa15.84■□□□□ 0.13
LIMCH1-220ENST00000514190 ARID4AP29374 1257 aaPredicted RBP15.84■□□□□ 0.13
LIMCH1-220ENST00000514190 GYG1P46976 350 aa15.84■□□□□ 0.13
LIMCH1-220ENST00000514190 DPP8Q6V1X1 898 aaPredicted RBP15.84■□□□□ 0.13
LIMCH1-220ENST00000514190 HAUS7Q99871 368 aa15.84■□□□□ 0.13
LIMCH1-220ENST00000514190 GPBP1L1Q9HC44 474 aaPredicted RBP15.84■□□□□ 0.13
LIMCH1-220ENST00000514190 SBF1O95248 1867 aa15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 ZBTB22O15209 634 aa15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 C21orf2O43822 256 aa15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 HIBADHP31937 336 aaKnown RBP15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 C9orf131Q5VYM1 1079 aa15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 TXNRD3Q86VQ6 643 aa15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 ZNF526Q8TF50 670 aaPredicted RBP15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 RTFDC1Q9BY42 306 aaPredicted RBP15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 GNL3LQ9NVN8 582 aaKnown RBP15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 ZNF219Q9P2Y4 722 aaPredicted RBP15.83■□□□□ 0.12
LIMCH1-220ENST00000514190 SLX4Q8IY92 1834 aa15.82■□□□□ 0.12
LIMCH1-220ENST00000514190 CACNA1SQ13698 1873 aa15.82■□□□□ 0.12
LIMCH1-220ENST00000514190 TRIM6-TRIM34B2RNG4 842 aa15.82■□□□□ 0.12
LIMCH1-220ENST00000514190 MAP4K4O95819 1239 aaPredicted RBP15.82■□□□□ 0.12
LIMCH1-220ENST00000514190 VPS37DQ86XT2 251 aa15.82■□□□□ 0.12
LIMCH1-220ENST00000514190 RTKN2Q8IZC4 609 aa15.82■□□□□ 0.12
LIMCH1-220ENST00000514190 EVI5LQ96CN4 794 aa15.82■□□□□ 0.12
LIMCH1-220ENST00000514190 LRRC37AA6NMS7 1700 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 MCAMP43121 646 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 SCARF1Q14162 830 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 CCDC93Q567U6 631 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 SOGA3Q5TF21 947 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 CNTROBQ8N137 903 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 RILPL2Q969X0 211 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 GPR101Q96P66 508 aaPredicted RBP15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 ZC3H12CQ9C0D7 883 aaKnown RBP15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 RNF181Q9P0P0 153 aa15.81■□□□□ 0.12
LIMCH1-220ENST00000514190 SNED1Q8TER0 1413 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 MED23Q9ULK4 1368 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 SEMA3EO15041 775 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 FKBP4Q02790 459 aaKnown RBP eCLIP15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 RASSF7Q02833 373 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 RASGRF1Q13972 1273 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 ZNF804AQ7Z570 1209 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 SUPT20HQ8NEM7 779 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 EYA3Q99504 573 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 DNAJC2Q99543 621 aaKnown RBP15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 SNRKQ9NRH2 765 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 HMG20BQ9P0W2 317 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 A0A1B0GUL6 1792 aa15.8■□□□□ 0.12
LIMCH1-220ENST00000514190 NFKBIEO00221 500 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 ZAP70P43403 619 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 C1QTNF8P60827 252 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 WASHC4Q2M389 1173 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 SPATA5Q8NB90 893 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 TDRD7Q8NHU6 1098 aaKnown RBP15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 EDC3Q96F86 508 aaKnown RBP15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 PAG1Q9NWQ8 432 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 DENND2AQ9ULE3 1009 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 NDUFB9Q9Y6M9 179 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 FER1L6Q2WGJ9 1857 aa15.79■□□□□ 0.12
LIMCH1-220ENST00000514190 ARAP2Q8WZ64 1704 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 GOLIM4O00461 696 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 CDC45O75419 566 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 IL1R1P14778 569 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms