RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CIAPIN1Q6FI81 312 aa9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 CCDC8Q9H0W5 538 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 ASTN2O75129 1339 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 C10orf71Q711Q0 1435 aa9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 CCT4P50991 539 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 TTLL5Q6EMB2 1281 aa9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 MICALL2Q8IY33 904 aa9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 TJP1Q07157 1748 aa9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 C1QTNF8P60827 252 aa9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 TSHZ3Q63HK5 1081 aa9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 ZNF830Q96NB3 372 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 CNOT7Q9UIV1 285 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-219ENST00000514096 VIRMAQ69YN4 1812 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 FAM193AP78312 1265 aa9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 GLIS2Q9BZE0 524 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 PNMA6EA0A0J9YXQ4 647 aa9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 GLTPD2A6NH11 291 aa9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 CEP126Q9P2H0 1117 aa9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 EPHX2P34913 555 aa9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 G3BP1Q13283 466 aaKnown RBP eCLIP9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 TMED8Q6PL24 325 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 PI16Q6UXB8 463 aa9.68□□□□□ -0.86
LIMCH1-219ENST00000514096 ZNF804BA4D1E1 1349 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 ZNF521Q96K83 1311 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 H7C1D1 291 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 H7C1W4 665 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 MAP4K4O95819 1239 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 TBC1D9Q6ZT07 1266 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 OGFOD1Q8N543 542 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 ZNF592Q92610 1267 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 BCCIPQ9P287 314 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 ZBED9Q6R2W3 1325 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 SMARCA5O60264 1052 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 FAM43AQ8N2R8 423 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 CRAMP1Q96RY5 1269 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 SLX4Q8IY92 1834 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 KIF16BQ96L93 1317 aa9.67□□□□□ -0.86
LIMCH1-219ENST00000514096 TCP10Q12799 353 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 SP8Q8IXZ3 490 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 CACNA1SQ13698 1873 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 PAPPAQ13219 1627 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 YDJCA8MPS7 323 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 MOB2Q70IA6 237 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 TRPM4Q8TD43 1214 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 HACL1Q9UJ83 578 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 ZNRF3Q9ULT6 936 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 FOXO4P98177 505 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 CRY2Q49AN0 593 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 SOGA3Q5TF21 947 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 USP48Q86UV5 1035 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 EYA3Q99504 573 aa9.66□□□□□ -0.86
LIMCH1-219ENST00000514096 GNAI2P04899 355 aa9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 ADORA1P30542 326 aa9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 IRX3P78415 501 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 TFCP2Q12800 502 aa9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 ZSCAN29Q8IWY8 852 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 KAZALD1Q96I82 304 aa9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 MYCP01106 439 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 FAM13BQ9NYF5 915 aa9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 XDHP47989 1333 aa9.65□□□□□ -0.86
LIMCH1-219ENST00000514096 ADM5C9JUS6 153 aa9.65□□□□□ -0.87
LIMCH1-219ENST00000514096 KIF3CO14782 793 aa9.65□□□□□ -0.87
LIMCH1-219ENST00000514096 SF3B3Q15393 1217 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-219ENST00000514096 MFSD14BQ5SR56 506 aa9.65□□□□□ -0.87
LIMCH1-219ENST00000514096 CNKSR2Q8WXI2 1034 aa9.65□□□□□ -0.87
LIMCH1-219ENST00000514096 DNAJC2Q99543 621 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-219ENST00000514096 C4AP0C0L4 1744 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 TCP10L2B9ZVM9 353 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 NBPF9Q3BBW0 867 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 C7orf43Q8WVR3 580 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 CRBNQ96SW2 442 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 PICALMQ13492 652 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 CAVIN4Q5BKX8 364 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 CNTROBQ8N137 903 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 RAD21O60216 631 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 SLURP2P0DP57 97 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 DIXDC1Q155Q3 683 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 SLC10A5Q5PT55 438 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 KRT26Q7Z3Y9 468 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 SKAP1Q86WV1 359 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 GGA3Q9NZ52 723 aa9.64□□□□□ -0.87
LIMCH1-219ENST00000514096 CASZ1Q86V15 1759 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 ALDH1L1O75891 902 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 TOMM70O94826 608 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 ATP2B3Q16720 1220 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 ANGEL2Q5VTE6 544 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 IPO9Q96P70 1041 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 TTF2Q9UNY4 1162 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 CELF2O95319 508 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 GNAI3P08754 354 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 HOXA10P31260 410 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 HIBADHP31937 336 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 TEX2Q8IWB9 1127 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 TAF1DQ9H5J8 278 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 RAI14Q9P0K7 980 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 KCNG1Q9UIX4 513 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 PTPRCP08575 1304 aa9.63□□□□□ -0.87
LIMCH1-219ENST00000514096 IFIT1P09914 478 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms