RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 SRGAP3O43295 1099 aa20.78■□□□□ 0.92
SNCA-209ENST00000506244 CIAO1O76071 339 aa20.78■□□□□ 0.92
SNCA-209ENST00000506244 PTPN12Q05209 780 aaKnown RBP20.78■□□□□ 0.92
SNCA-209ENST00000506244 EAPPQ56P03 285 aaPredicted RBP20.78■□□□□ 0.92
SNCA-209ENST00000506244 KLHDC4Q8TBB5 520 aa20.78■□□□□ 0.92
SNCA-209ENST00000506244 DPF2Q92785 391 aa20.78■□□□□ 0.92
SNCA-209ENST00000506244 ADARB2Q9NS39 739 aaKnown RBP20.78■□□□□ 0.92
SNCA-209ENST00000506244 USP17L3A6NCW0 530 aa20.77■□□□□ 0.92
SNCA-209ENST00000506244 USP17L4A6NCW7 530 aa20.77■□□□□ 0.92
SNCA-209ENST00000506244 WTIPA6NIX2 430 aaPredicted RBP20.77■□□□□ 0.92
SNCA-209ENST00000506244 KLRK1P26718 216 aa20.77■□□□□ 0.92
SNCA-209ENST00000506244 LRRC24Q50LG9 513 aa20.77■□□□□ 0.92
SNCA-209ENST00000506244 USP50Q70EL3 339 aaPredicted RBP20.77■□□□□ 0.92
SNCA-209ENST00000506244 USP17L1Q7RTZ2 530 aa20.77■□□□□ 0.92
SNCA-209ENST00000506244 CHMP4BQ9H444 224 aaKnown RBP20.77■□□□□ 0.92
SNCA-209ENST00000506244 PDE8BO95263 885 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 VIL1P09327 827 aaKnown RBP20.76■□□□□ 0.91
SNCA-209ENST00000506244 CHADLQ6NUI6 762 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 TXNRD3Q86VQ6 643 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 PANK1Q8TE04 598 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 COPRSQ9NQ92 184 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 ADAMTSL1Q8N6G6 1762 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 MYO3BQ8WXR4 1341 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 IRS2Q9Y4H2 1338 aa20.76■□□□□ 0.91
SNCA-209ENST00000506244 H7C1D1 291 aa20.75■□□□□ 0.91
SNCA-209ENST00000506244 IL15P40933 162 aaPredicted RBP20.75■□□□□ 0.91
SNCA-209ENST00000506244 EPS15P42566 896 aa20.75■□□□□ 0.91
SNCA-209ENST00000506244 PUM3Q15397 648 aaKnown RBP20.75■□□□□ 0.91
SNCA-209ENST00000506244 STRIP1Q5VSL9 837 aa20.75■□□□□ 0.91
SNCA-209ENST00000506244 RSBN1LQ6PCB5 846 aaPredicted RBP20.75■□□□□ 0.91
SNCA-209ENST00000506244 VGLL2Q8N8G2 317 aa20.75■□□□□ 0.91
SNCA-209ENST00000506244 AGBL3Q8NEM8 1001 aa20.75■□□□□ 0.91
SNCA-209ENST00000506244 DDX19BQ9UMR2 479 aa20.75■□□□□ 0.91
SNCA-209ENST00000506244 SNAP23O00161 211 aa20.74■□□□□ 0.91
SNCA-209ENST00000506244 MVPQ14764 893 aaKnown RBP20.74■□□□□ 0.91
SNCA-209ENST00000506244 MICALL2Q8IY33 904 aa20.74■□□□□ 0.91
SNCA-209ENST00000506244 SIL1Q9H173 461 aa20.74■□□□□ 0.91
SNCA-209ENST00000506244 CNOT7Q9UIV1 285 aaKnown RBP20.74■□□□□ 0.91
SNCA-209ENST00000506244 CLEC11AQ9Y240 323 aa20.74■□□□□ 0.91
SNCA-209ENST00000506244 ZBTB12Q9Y330 459 aaPredicted RBP20.74■□□□□ 0.91
SNCA-209ENST00000506244 ZBTB7BO15156 539 aaPredicted RBP20.73■□□□□ 0.91
SNCA-209ENST00000506244 IFIT1P09914 478 aaKnown RBP20.73■□□□□ 0.91
SNCA-209ENST00000506244 PDE3AQ14432 1141 aa20.73■□□□□ 0.91
SNCA-209ENST00000506244 FBXW7Q969H0 707 aa20.73■□□□□ 0.91
SNCA-209ENST00000506244 CD209Q9NNX6 404 aa20.73■□□□□ 0.91
SNCA-209ENST00000506244 KCNQ5Q9NR82 932 aa20.73■□□□□ 0.91
SNCA-209ENST00000506244 SLC5A1P13866 664 aa20.72■□□□□ 0.91
SNCA-209ENST00000506244 IL1R1P14778 569 aa20.72■□□□□ 0.91
SNCA-209ENST00000506244 HSPA6P17066 643 aa20.72■□□□□ 0.91
SNCA-209ENST00000506244 CAVIN4Q5BKX8 364 aa20.72■□□□□ 0.91
SNCA-209ENST00000506244 ATG9AQ7Z3C6 839 aa20.72■□□□□ 0.91
SNCA-209ENST00000506244 VPS37DQ86XT2 251 aa20.72■□□□□ 0.91
SNCA-209ENST00000506244 CEP126Q9P2H0 1117 aa20.72■□□□□ 0.91
SNCA-209ENST00000506244 POTEIP0CG38 1075 aa20.71■□□□□ 0.91
SNCA-209ENST00000506244 POTEJP0CG39 1038 aa20.71■□□□□ 0.91
SNCA-209ENST00000506244 HIBADHP31937 336 aaKnown RBP20.71■□□□□ 0.91
SNCA-209ENST00000506244 MMP14P50281 582 aa20.71■□□□□ 0.91
SNCA-209ENST00000506244 LPIN2Q92539 896 aa20.71■□□□□ 0.91
SNCA-209ENST00000506244 PA2G4Q9UQ80 394 aaKnown RBP20.71■□□□□ 0.91
SNCA-209ENST00000506244 ZNF646O15015 1829 aaPredicted RBP20.71■□□□□ 0.91
SNCA-209ENST00000506244 DACT2Q5SW24 774 aa20.7■□□□□ 0.9
SNCA-209ENST00000506244 TTLL5Q6EMB2 1281 aa20.7■□□□□ 0.9
SNCA-209ENST00000506244 PNMA6EA0A0J9YXQ4 647 aa20.69■□□□□ 0.9
SNCA-209ENST00000506244 GTF2IP78347 998 aa20.69■□□□□ 0.9
SNCA-209ENST00000506244 C1orf115Q9H7X2 142 aa20.69■□□□□ 0.9
SNCA-209ENST00000506244 COG6Q9Y2V7 657 aa20.69■□□□□ 0.9
SNCA-209ENST00000506244 USP17L8P0C7I0 530 aa20.68■□□□□ 0.9
SNCA-209ENST00000506244 FGFR2P21802 821 aa20.68■□□□□ 0.9
SNCA-209ENST00000506244 GYG1P46976 350 aa20.68■□□□□ 0.9
SNCA-209ENST00000506244 APLP1P51693 650 aa20.68■□□□□ 0.9
SNCA-209ENST00000506244 ATP2B3Q16720 1220 aa20.68■□□□□ 0.9
SNCA-209ENST00000506244 OGFOD1Q8N543 542 aa20.68■□□□□ 0.9
SNCA-209ENST00000506244 ZC3H15Q8WU90 426 aaKnown RBP20.68■□□□□ 0.9
SNCA-209ENST00000506244 FAM84BQ96KN1 310 aaPredicted RBP20.68■□□□□ 0.9
SNCA-209ENST00000506244 GMLQ99445 158 aa20.68■□□□□ 0.9
SNCA-209ENST00000506244 ZNF280AP59817 542 aaPredicted RBP20.67■□□□□ 0.9
SNCA-209ENST00000506244 FKBP1AP62942 108 aaKnown RBP20.67■□□□□ 0.9
SNCA-209ENST00000506244 ATP8B2P98198 1209 aa20.67■□□□□ 0.9
SNCA-209ENST00000506244 G3BP1Q13283 466 aaKnown RBP eCLIP20.67■□□□□ 0.9
SNCA-209ENST00000506244 POLA2Q14181 598 aa20.67■□□□□ 0.9
SNCA-209ENST00000506244 TRPM4Q8TD43 1214 aa20.67■□□□□ 0.9
SNCA-209ENST00000506244 SSH3Q8TE77 659 aa20.67■□□□□ 0.9
SNCA-209ENST00000506244 AKAP2Q9Y2D5 859 aa20.67■□□□□ 0.9
SNCA-209ENST00000506244 ARAP2Q8WZ64 1704 aa20.67■□□□□ 0.9
SNCA-209ENST00000506244 SASH1O94885 1247 aa20.66■□□□□ 0.9
SNCA-209ENST00000506244 KIF4BQ2VIQ3 1234 aa20.66■□□□□ 0.9
SNCA-209ENST00000506244 FBXO33Q7Z6M2 555 aa20.66■□□□□ 0.9
SNCA-209ENST00000506244 TDRD7Q8NHU6 1098 aaKnown RBP20.66■□□□□ 0.9
SNCA-209ENST00000506244 HDAC9Q9UKV0 1011 aa20.66■□□□□ 0.9
SNCA-209ENST00000506244 FAM205AQ6ZU69 1335 aa20.65■□□□□ 0.9
SNCA-209ENST00000506244 SHTN1A0MZ66 631 aa20.65■□□□□ 0.9
SNCA-209ENST00000506244 FRAT2O75474 233 aaPredicted RBP20.65■□□□□ 0.9
SNCA-209ENST00000506244 TBC1D10BQ4KMP7 808 aaPredicted RBP20.65■□□□□ 0.9
SNCA-209ENST00000506244 MAP1SQ66K74 1059 aaPredicted RBP20.65■□□□□ 0.9
SNCA-209ENST00000506244 CEP85Q6P2H3 762 aa20.65■□□□□ 0.9
SNCA-209ENST00000506244 CNTROBQ8N137 903 aa20.65■□□□□ 0.9
SNCA-209ENST00000506244 OS9Q13438 667 aaPredicted RBP20.64■□□□□ 0.89
SNCA-209ENST00000506244 SAMD7Q7Z3H4 446 aa20.64■□□□□ 0.89
SNCA-209ENST00000506244 MYOZ2Q9NPC6 264 aa20.64■□□□□ 0.89
SNCA-209ENST00000506244 GNL3LQ9NVN8 582 aaKnown RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms