RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 LMNB1P20700 586 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 IARSP41252 1262 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 HDAC1Q13547 482 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 ATP2B3Q16720 1220 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 GORABQ5T7V8 394 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 NIM1KQ8IY84 436 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 CLASRPQ8N2M8 674 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 RHPN1Q8TCX5 695 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 LPIN2Q92539 896 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 GCC1Q96CN9 775 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 KIF1BPQ96EK5 621 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 RTFDC1Q9BY42 306 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 VPS33BQ9H267 617 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 DCTPP1Q9H773 170 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 RNF181Q9P0P0 153 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 LTBP3Q9NS15 1303 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 SASH1O94885 1247 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 IGHDP01880 384 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 TIMM10P62072 90 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 DOK7Q18PE1 504 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 ANKRD45Q5TZF3 282 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 C9orf131Q5VYM1 1079 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 FBXW7Q969H0 707 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 CCDC136Q96JN2 1154 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 LRRCC1Q9C099 1032 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 IL1RAPL2Q9NP60 686 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 ARFGEF1Q9Y6D6 1849 aa10.11□□□□□ -0.79
LIMCH1-206ENST00000505705 A0A1B0GUL7 405 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 WTIPA6NIX2 430 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 IFIT2P09913 472 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 HIBADHP31937 336 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 GYG1P46976 350 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 KIAA2012Q0VF49 1180 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 TNNI3KQ59H18 835 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 ERICH6BQ5W0A0 696 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 B4GALNT3Q6L9W6 998 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 ZNF804AQ7Z570 1209 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 VGLL2Q8N8G2 317 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 CCDC8Q9H0W5 538 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 DBNDD1Q9H9R9 158 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 FPGT-TNNI3KV9GXZ4 949 aa10.1□□□□□ -0.79
LIMCH1-206ENST00000505705 SRCAPQ6ZRS2 3230 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 SMARCA5O60264 1052 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 ECE2O60344 883 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 KLRK1P26718 216 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 EIF6P56537 245 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 CCDC158Q5M9N0 1113 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 AACSQ86V21 672 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 XAGE2Q96GT9 111 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 COA1Q9GZY4 146 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 GPR108Q9NPR9 543 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 GNL3LQ9NVN8 582 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 MED23Q9ULK4 1368 aa10.09□□□□□ -0.79
LIMCH1-206ENST00000505705 LRRC37AA6NMS7 1700 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 FGFR2P21802 821 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 BCAMP50895 628 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 TTC39AQ5SRH9 613 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 DPY19L2Q6NUT2 758 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 TXNRD3Q86VQ6 643 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 CD209Q9NNX6 404 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 PPP4R2Q9NY27 417 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 ZNRF3Q9ULT6 936 aa10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-206ENST00000505705 FER1L6Q2WGJ9 1857 aa10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 ADORA1P30542 326 aa10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 PRELPP51888 382 aa10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 C15orf52Q6ZUT6 534 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 PODNQ7Z5L7 613 aa10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 EAF2Q96CJ1 260 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 FAM84BQ96KN1 310 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 DBNDD2Q9BQY9 259 aa10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 IQSEC3Q9UPP2 1182 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 GJA3Q9Y6H8 435 aa10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 SNED1Q8TER0 1413 aa10.07□□□□□ -0.8
LIMCH1-206ENST00000505705 RAD17O75943 681 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 GTF2IP78347 998 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 CHAF1AQ13111 956 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 TNIP1Q15025 636 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 CCDC102BQ68D86 513 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 TTLL5Q6EMB2 1281 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 CIAPIN1Q6FI81 312 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 GPATCH3Q96I76 525 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 ZNF609O15014 1411 aa10.06□□□□□ -0.8
LIMCH1-206ENST00000505705 USP17L3A6NCW0 530 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 USP17L4A6NCW7 530 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 FZD9O00144 591 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 ZBTB22O15209 634 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 UQCRFS1P1P0C7P4 283 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 PHKA1P46020 1223 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 CENPQQ7L2Z9 268 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 USP17L1Q7RTZ2 530 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 FBXO33Q7Z6M2 555 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 CHD1LQ86WJ1 897 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 SMC5Q8IY18 1101 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 LNPKQ9C0E8 428 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 TLR7Q9NYK1 1049 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 DENND2AQ9ULE3 1009 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 JAG2Q9Y219 1238 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 DUOX1Q9NRD9 1551 aa10.05□□□□□ -0.8
LIMCH1-206ENST00000505705 YDJCA8MPS7 323 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms