RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ASAP1Q9ULH1 1129 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 SBF2Q86WG5 1849 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 ERVV-1B6SEH8 477 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 EXOC5O00471 708 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 FIBPO43427 364 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 CYP21A2P08686 494 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 FGD1P98174 961 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 UVSSAQ2YD98 709 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 NECAB1Q8N987 351 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 CHAMP1Q96JM3 812 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 PDLIM2Q96JY6 352 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 AK7Q96M32 723 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 NSFL1CQ9UNZ2 370 aaKnown RBP14.19□□□□□ -0.14
NUP54-202ENST00000502850 ZNF330Q9Y3S2 320 aaPredicted RBP14.19□□□□□ -0.14
NUP54-202ENST00000502850 ARAP2Q8WZ64 1704 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 GADD45BO75293 160 aaPredicted RBP14.18□□□□□ -0.14
NUP54-202ENST00000502850 HSP90B1P14625 803 aaKnown RBP14.18□□□□□ -0.14
NUP54-202ENST00000502850 TIMM10P62072 90 aa14.18□□□□□ -0.14
NUP54-202ENST00000502850 ZSCAN25Q6NSZ9 544 aa14.18□□□□□ -0.14
NUP54-202ENST00000502850 DHX32Q7L7V1 743 aaKnown RBP14.18□□□□□ -0.14
NUP54-202ENST00000502850 ZNF594Q96JF6 807 aaPredicted RBP14.18□□□□□ -0.14
NUP54-202ENST00000502850 SCAND2PQ9GZW5 306 aaPredicted RBP14.18□□□□□ -0.14
NUP54-202ENST00000502850 GDPD2Q9HCC8 539 aa14.18□□□□□ -0.14
NUP54-202ENST00000502850 LRP5O75197 1615 aa14.18□□□□□ -0.14
NUP54-202ENST00000502850 ANKRD18BA2A2Z9 1011 aa14.17□□□□□ -0.14
NUP54-202ENST00000502850 IL6STP40189 918 aaPredicted RBP14.17□□□□□ -0.14
NUP54-202ENST00000502850 HMGN5P82970 282 aaKnown RBP14.17□□□□□ -0.14
NUP54-202ENST00000502850 FOXD4L6Q3SYB3 417 aaPredicted RBP14.17□□□□□ -0.14
NUP54-202ENST00000502850 FOXD4L3Q6VB84 417 aaPredicted RBP14.17□□□□□ -0.14
NUP54-202ENST00000502850 CCDC129Q6ZRS4 1044 aa14.17□□□□□ -0.14
NUP54-202ENST00000502850 Q6ZUG5 572 aa14.17□□□□□ -0.14
NUP54-202ENST00000502850 ZSCAN30Q86W11 494 aa14.17□□□□□ -0.14
NUP54-202ENST00000502850 NLRP10Q86W26 655 aa14.17□□□□□ -0.14
NUP54-202ENST00000502850 ZNF512BQ96KM6 892 aaPredicted RBP14.17□□□□□ -0.14
NUP54-202ENST00000502850 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.17□□□□□ -0.14
NUP54-202ENST00000502850 RIC1Q4ADV7 1423 aa14.17□□□□□ -0.14
NUP54-202ENST00000502850 RREB1Q92766 1687 aa14.17□□□□□ -0.14
NUP54-202ENST00000502850 MAST3O60307 1309 aa14.16□□□□□ -0.14
NUP54-202ENST00000502850 CYP19A1P11511 503 aaPredicted RBP14.16□□□□□ -0.14
NUP54-202ENST00000502850 XAGE2Q96GT9 111 aa14.16□□□□□ -0.14
NUP54-202ENST00000502850 ZSCAN16Q9H4T2 348 aaPredicted RBP14.16□□□□□ -0.14
NUP54-202ENST00000502850 MYH15Q9Y2K3 1946 aa14.16□□□□□ -0.14
NUP54-202ENST00000502850 HSPD1P10809 573 aaKnown RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 MSNP26038 577 aaKnown RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 CTSWP56202 376 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 DNM1Q05193 864 aaKnown RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 R3HDM1Q15032 1099 aaKnown RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 TTF1Q15361 905 aaPredicted RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 ATP2B3Q16720 1220 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 FBXL16Q8N461 479 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 MARCH10Q8NA82 808 aaPredicted RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 SEC62Q99442 399 aaKnown RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 AGXT2Q9BYV1 514 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 NDUFB9Q9Y6M9 179 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 LAMB2P55268 1798 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 PFKFB2O60825 505 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 MCM5P33992 734 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 METTL24Q5JXM2 366 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 APPBP2Q92624 585 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 FAM89AQ96GI7 184 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 PUS3Q9BZE2 481 aaKnown RBP14.15□□□□□ -0.14
NUP54-202ENST00000502850 CCDC39Q9UFE4 941 aa14.15□□□□□ -0.14
NUP54-202ENST00000502850 PDE8AO60658 829 aa14.14□□□□□ -0.15
NUP54-202ENST00000502850 IMMTQ16891 758 aaKnown RBP14.14□□□□□ -0.15
NUP54-202ENST00000502850 CDC37L1Q7L3B6 337 aa14.14□□□□□ -0.15
NUP54-202ENST00000502850 TAF6LQ9Y6J9 622 aa14.14□□□□□ -0.15
NUP54-202ENST00000502850 WDR19Q8NEZ3 1342 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 DDX60Q8IY21 1712 aaKnown RBP14.13□□□□□ -0.15
NUP54-202ENST00000502850 H3BQV1 296 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 ITGA6P23229 1130 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 FKBP4Q02790 459 aaKnown RBP eCLIP14.13□□□□□ -0.15
NUP54-202ENST00000502850 IFFO2Q5TF58 517 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 NAA16Q6N069 864 aaPredicted RBP14.13□□□□□ -0.15
NUP54-202ENST00000502850 LDHAL6AQ6ZMR3 332 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 SMARCC2Q8TAQ2 1214 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 BRF1Q92994 677 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 TCEANC2Q96MN5 208 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 CNNM1Q9NRU3 951 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 MROH5Q6ZUA9 1318 aa14.13□□□□□ -0.15
NUP54-202ENST00000502850 ZNF831Q5JPB2 1677 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 GOLGA6L4A6NEF3 574 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 E7EWF7 191 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 IRS4O14654 1257 aaPredicted RBP14.12□□□□□ -0.15
NUP54-202ENST00000502850 UQCRFS1P1P0C7P4 283 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 EXOSC10Q01780 885 aaKnown RBP14.12□□□□□ -0.15
NUP54-202ENST00000502850 STK3Q13188 491 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 ATL3Q6DD88 541 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 DZIP3Q86Y13 1208 aaKnown RBP14.12□□□□□ -0.15
NUP54-202ENST00000502850 TTLL11Q8NHH1 800 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 ZNF274Q96GC6 653 aaPredicted RBP14.12□□□□□ -0.15
NUP54-202ENST00000502850 BCL11BQ9C0K0 894 aaPredicted RBP14.12□□□□□ -0.15
NUP54-202ENST00000502850 TRMT112Q9UI30 125 aaKnown RBP14.12□□□□□ -0.15
NUP54-202ENST00000502850 CFAP45Q9UL16 551 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 RIPOR2Q9Y4F9 1068 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 KAT6BQ8WYB5 2073 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 AKAP11Q9UKA4 1901 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 WASHC4Q2M389 1173 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 STOX1Q6ZVD7 989 aa14.12□□□□□ -0.15
NUP54-202ENST00000502850 DDX19AQ9NUU7 478 aaKnown RBP14.12□□□□□ -0.15
NUP54-202ENST00000502850 ZBTB1Q9Y2K1 713 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms