RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 MEIS1O00470 390 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 GIGYF1O75420 1035 aaPredicted RBP6.58□□□□□ -1.36
USF3-204ENST00000496826 SLC8A1P32418 973 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 PHEXP78562 749 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 RPL19P84098 196 aaKnown RBP6.58□□□□□ -1.36
USF3-204ENST00000496826 MED21Q13503 144 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 TTLL7Q6ZT98 887 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 ZNF354CQ86Y25 554 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 CCDC12Q8WUD4 166 aaPredicted RBP6.58□□□□□ -1.36
USF3-204ENST00000496826 NEMFO60524 1076 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 NLRP5P59047 1200 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 STX3Q13277 289 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 SRLQ86TD4 932 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 POTEEQ6S8J3 1075 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 TMEM247A6NEH6 219 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 DYNC1LI2O43237 492 aaPredicted RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 RNF40O75150 1001 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 ASPHQ12797 758 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 ESRP1Q6NXG1 681 aaKnown RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.57□□□□□ -1.36
USF3-204ENST00000496826 PDCD10Q9BUL8 212 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 MAFGO15525 162 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 RASSF7Q02833 373 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 NEDD9Q14511 834 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 SLMAPQ14BN4 828 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 LRRC43Q8N309 656 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 C19orf60Q96EN9 201 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 MBD2Q9UBB5 411 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 BASP1P80723 227 aaKnown RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 DHX34Q14147 1143 aaKnown RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 C6orf118Q5T5N4 469 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 RCSD1Q6JBY9 416 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 SARS2Q9NP81 518 aaKnown RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 SCHIP1Q9P0W5 487 aaPredicted RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 GEN1Q17RS7 908 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 NUP62CLQ9H1M0 184 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 SEPT3Q9UH03 358 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 GOLGA8BA8MQT2 603 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 POTEIP0CG38 1075 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 PPARGP37231 505 aaPredicted RBP6.57□□□□□ -1.36
USF3-204ENST00000496826 C11orf88Q6PI97 169 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 SYTL2Q9HCH5 934 aa6.57□□□□□ -1.36
USF3-204ENST00000496826 RSPH10B2B2RC85 870 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 RSPH10BP0C881 870 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 CALM1P0DP23 149 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 CALM2P0DP24 149 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 CALM3P0DP25 149 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 KRT4P19013 534 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 LONP1P36776 959 aaKnown RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 RBBP5Q15291 538 aaKnown RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 BRDTQ58F21 947 aaPredicted RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 SLC13A4Q9UKG4 626 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 PAK3O75914 559 aaPredicted RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 SHQ1Q6PI26 577 aaKnown RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 ACTR5Q9H9F9 607 aaPredicted RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 XAB2Q9HCS7 855 aaKnown RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 KIF15Q9NS87 1388 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 TRAK2O60296 914 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 ARL13BQ3SXY8 428 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 RELL1Q8IUW5 271 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 MTBPQ96DY7 904 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 CCDC90BQ9GZT6 254 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 SMIM24O75264 130 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 MAPK1P28482 360 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 COG7P83436 770 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 KARSQ15046 597 aaKnown RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 IWS1Q96ST2 819 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 ZSCAN9O15535 394 aaPredicted RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 RABEP2Q9H5N1 569 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 MPP6Q9NZW5 540 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 ATP8A1Q9Y2Q0 1164 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 FAM83GA6ND36 823 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 STXBP3O00186 592 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 CCNB2O95067 398 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 UTS2BQ765I0 119 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 SYTL4Q96C24 671 aaPredicted RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 NUB1Q9Y5A7 615 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 SESN1Q9Y6P5 492 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 A0A1B0GUL7 405 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 GOLGA8JA6NMD2 632 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 ZFXP17010 805 aaPredicted RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 TEFQ10587 303 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 KRR1Q13601 381 aaKnown RBP6.56□□□□□ -1.36
USF3-204ENST00000496826 ARHGEF6Q15052 776 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 CYTH1Q15438 398 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 RNF207Q6ZRF8 634 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 RAPGEF4Q8WZA2 1011 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 SH3GL1Q99961 368 aa6.56□□□□□ -1.36
USF3-204ENST00000496826 PRPF4BQ13523 1007 aaKnown RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 C16orf71Q8IYS4 520 aaPredicted RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 CCDC63Q8NA47 563 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 TTC1Q99614 292 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 NHEJ1Q9H9Q4 299 aaPredicted RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 STRN4Q9NRL3 753 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.55□□□□□ -1.36
USF3-204ENST00000496826 SPG7Q9UQ90 795 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 LCA5LO95447 670 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 NRG3P56975 720 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms