RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ZNF594Q96JF6 807 aaPredicted RBP12.79□□□□□ -0.36
SKA1-204ENST00000488454 CNNM1Q9NRU3 951 aa12.79□□□□□ -0.36
SKA1-204ENST00000488454 BSDC1Q9NW68 430 aaPredicted RBP12.79□□□□□ -0.36
SKA1-204ENST00000488454 ATP6V0A2Q9Y487 856 aa12.79□□□□□ -0.36
SKA1-204ENST00000488454 PNMA6EA0A0J9YXQ4 647 aa12.78□□□□□ -0.36
SKA1-204ENST00000488454 GRIPAP1Q4V328 841 aa12.78□□□□□ -0.36
SKA1-204ENST00000488454 KIF3CO14782 793 aa12.77□□□□□ -0.37
SKA1-204ENST00000488454 PTPN12Q05209 780 aaKnown RBP12.77□□□□□ -0.37
SKA1-204ENST00000488454 G3BP1Q13283 466 aaKnown RBP eCLIP12.77□□□□□ -0.37
SKA1-204ENST00000488454 CCDC93Q567U6 631 aa12.77□□□□□ -0.37
SKA1-204ENST00000488454 LCE2DQ5TA82 110 aaPredicted RBP12.77□□□□□ -0.37
SKA1-204ENST00000488454 RTKN2Q8IZC4 609 aa12.77□□□□□ -0.37
SKA1-204ENST00000488454 SSH3Q8TE77 659 aa12.77□□□□□ -0.37
SKA1-204ENST00000488454 ANKIB1Q9P2G1 1089 aa12.77□□□□□ -0.37
SKA1-204ENST00000488454 N4BP2Q86UW6 1770 aaPredicted RBP12.76□□□□□ -0.37
SKA1-204ENST00000488454 C2orf72A6NCS6 295 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 GRIN3BO60391 1043 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 SURF6O75683 361 aaKnown RBP12.76□□□□□ -0.37
SKA1-204ENST00000488454 RFX5P48382 616 aaPredicted RBP12.76□□□□□ -0.37
SKA1-204ENST00000488454 OS9Q13438 667 aaPredicted RBP12.76□□□□□ -0.37
SKA1-204ENST00000488454 ARHGAP27Q6ZUM4 889 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 MPNDQ8N594 471 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 KLHDC4Q8TBB5 520 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 ANKRD2Q9GZV1 360 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 SIL1Q9H173 461 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 COPRSQ9NQ92 184 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 NSFL1CQ9UNZ2 370 aaKnown RBP12.76□□□□□ -0.37
SKA1-204ENST00000488454 TNRC6CQ9HCJ0 1690 aaKnown RBP12.76□□□□□ -0.37
SKA1-204ENST00000488454 DDX60Q8IY21 1712 aaKnown RBP12.76□□□□□ -0.37
SKA1-204ENST00000488454 KIF13BQ9NQT8 1826 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 ANKRD31Q8N7Z5 1873 aa12.76□□□□□ -0.37
SKA1-204ENST00000488454 EYA2O00167 538 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 CIAO1O76071 339 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 HSP90AB4PQ58FF6 505 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 METTL24Q5JXM2 366 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 DPP8Q6V1X1 898 aaPredicted RBP12.75□□□□□ -0.37
SKA1-204ENST00000488454 MROH5Q6ZUA9 1318 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 SPRYD3Q8NCJ5 442 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 C7orf43Q8WVR3 580 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 RWDD1Q9H446 243 aaPredicted RBP12.75□□□□□ -0.37
SKA1-204ENST00000488454 MINPP1Q9UNW1 487 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 PA2G4Q9UQ80 394 aaKnown RBP12.75□□□□□ -0.37
SKA1-204ENST00000488454 PCDHB15Q9Y5E8 787 aa12.75□□□□□ -0.37
SKA1-204ENST00000488454 IL15P40933 162 aaPredicted RBP12.74□□□□□ -0.37
SKA1-204ENST00000488454 KCNJ4P48050 445 aa12.74□□□□□ -0.37
SKA1-204ENST00000488454 CHRNDQ07001 517 aa12.74□□□□□ -0.37
SKA1-204ENST00000488454 SIRT2Q8IXJ6 389 aa12.74□□□□□ -0.37
SKA1-204ENST00000488454 SUPT20HQ8NEM7 779 aa12.74□□□□□ -0.37
SKA1-204ENST00000488454 TMC2Q8TDI7 906 aa12.74□□□□□ -0.37
SKA1-204ENST00000488454 PUS3Q9BZE2 481 aaKnown RBP12.74□□□□□ -0.37
SKA1-204ENST00000488454 CEP126Q9P2H0 1117 aa12.74□□□□□ -0.37
SKA1-204ENST00000488454 RIPOR2Q9Y4F9 1068 aa12.74□□□□□ -0.37
SKA1-204ENST00000488454 XDHP47989 1333 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 C6orf229H3BNL8 230 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 YBX3P16989 372 aaKnown RBP eCLIP12.73□□□□□ -0.37
SKA1-204ENST00000488454 ATP2B4P23634 1241 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 GPSM2P81274 684 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 LRRC24Q50LG9 513 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 OLFM4Q6UX06 510 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 ERC1Q8IUD2 1116 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 GGA1Q9UJY5 639 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 NOP58Q9Y2X3 529 aaKnown RBP12.73□□□□□ -0.37
SKA1-204ENST00000488454 LAMB2P55268 1798 aa12.73□□□□□ -0.37
SKA1-204ENST00000488454 ST18O60284 1047 aa12.72□□□□□ -0.37
SKA1-204ENST00000488454 RAB11FIP3O75154 756 aa12.72□□□□□ -0.37
SKA1-204ENST00000488454 HOXB3P14651 431 aaPredicted RBP12.72□□□□□ -0.37
SKA1-204ENST00000488454 HELBQ8NG08 1087 aaPredicted RBP12.72□□□□□ -0.37
SKA1-204ENST00000488454 EYA3Q99504 573 aa12.72□□□□□ -0.37
SKA1-204ENST00000488454 PODXL2Q9NZ53 605 aa12.72□□□□□ -0.37
SKA1-204ENST00000488454 LEMD3Q9Y2U8 911 aa12.72□□□□□ -0.37
SKA1-204ENST00000488454 MYH3P11055 1940 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 TAF5LO75529 589 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 UFL1O94874 794 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 PDE8BO95263 885 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 FKBP4Q02790 459 aaKnown RBP eCLIP12.71□□□□□ -0.37
SKA1-204ENST00000488454 HDAC1Q13547 482 aaPredicted RBP12.71□□□□□ -0.37
SKA1-204ENST00000488454 ERICH6BQ5W0A0 696 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 PAXIP1Q6ZW49 1069 aaPredicted RBP12.71□□□□□ -0.37
SKA1-204ENST00000488454 ZC3H12CQ9C0D7 883 aaKnown RBP12.71□□□□□ -0.37
SKA1-204ENST00000488454 TAOK3Q9H2K8 898 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 EXOC6BQ9Y2D4 811 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 AKAP2Q9Y2D5 859 aa12.71□□□□□ -0.37
SKA1-204ENST00000488454 COL11A2P13942 1736 aaPredicted RBP12.71□□□□□ -0.38
SKA1-204ENST00000488454 ZNF804BA4D1E1 1349 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 APBB1O00213 710 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 WASHC4Q2M389 1173 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 ATG9AQ7Z3C6 839 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 TBC1D16Q8TBP0 767 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 PSMD1Q99460 953 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 VPS33BQ9H267 617 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 DCTPP1Q9H773 170 aa12.7□□□□□ -0.38
SKA1-204ENST00000488454 IFIT1P09914 478 aaKnown RBP12.69□□□□□ -0.38
SKA1-204ENST00000488454 TFCP2Q12800 502 aa12.69□□□□□ -0.38
SKA1-204ENST00000488454 UBE4AQ14139 1066 aa12.69□□□□□ -0.38
SKA1-204ENST00000488454 PUM3Q15397 648 aaKnown RBP12.69□□□□□ -0.38
SKA1-204ENST00000488454 GCC1Q96CN9 775 aa12.69□□□□□ -0.38
SKA1-204ENST00000488454 KIF1BPQ96EK5 621 aa12.69□□□□□ -0.38
SKA1-204ENST00000488454 RTFDC1Q9BY42 306 aaPredicted RBP12.69□□□□□ -0.38
SKA1-204ENST00000488454 POLLQ9UGP5 575 aa12.69□□□□□ -0.38
SKA1-204ENST00000488454 SLX4Q8IY92 1834 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms