RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 GMPSP49915 693 aaPredicted RBP18.41■□□□□ 0.54
USP4-212ENST00000486549 SCNN1DP51172 638 aa18.41■□□□□ 0.54
USP4-212ENST00000486549 PTPN12Q05209 780 aaKnown RBP18.41■□□□□ 0.54
USP4-212ENST00000486549 KLRG1Q96E93 195 aa18.41■□□□□ 0.54
USP4-212ENST00000486549 C1orf115Q9H7X2 142 aa18.41■□□□□ 0.54
USP4-212ENST00000486549 EYA2O00167 538 aa18.4■□□□□ 0.54
USP4-212ENST00000486549 SRGAP3O43295 1099 aa18.4■□□□□ 0.54
USP4-212ENST00000486549 EAPPQ56P03 285 aaPredicted RBP18.4■□□□□ 0.54
USP4-212ENST00000486549 FBXW7Q969H0 707 aa18.4■□□□□ 0.54
USP4-212ENST00000486549 PA2G4Q9UQ80 394 aaKnown RBP18.4■□□□□ 0.54
USP4-212ENST00000486549 ZBTB12Q9Y330 459 aaPredicted RBP18.4■□□□□ 0.54
USP4-212ENST00000486549 POTEIP0CG38 1075 aa18.39■□□□□ 0.53
USP4-212ENST00000486549 POTEJP0CG39 1038 aa18.39■□□□□ 0.53
USP4-212ENST00000486549 EPS15P42566 896 aa18.39■□□□□ 0.53
USP4-212ENST00000486549 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.39■□□□□ 0.53
USP4-212ENST00000486549 COA1Q9GZY4 146 aa18.39■□□□□ 0.53
USP4-212ENST00000486549 CLEC11AQ9Y240 323 aa18.39■□□□□ 0.53
USP4-212ENST00000486549 ZBTB7BO15156 539 aaPredicted RBP18.38■□□□□ 0.53
USP4-212ENST00000486549 PODNQ7Z5L7 613 aa18.38■□□□□ 0.53
USP4-212ENST00000486549 GPRC5DQ9NZD1 345 aa18.38■□□□□ 0.53
USP4-212ENST00000486549 COG6Q9Y2V7 657 aa18.38■□□□□ 0.53
USP4-212ENST00000486549 IRS2Q9Y4H2 1338 aa18.38■□□□□ 0.53
USP4-212ENST00000486549 MTX1Q13505 466 aa18.37■□□□□ 0.53
USP4-212ENST00000486549 UBE4AQ14139 1066 aa18.37■□□□□ 0.53
USP4-212ENST00000486549 MVPQ14764 893 aaKnown RBP18.37■□□□□ 0.53
USP4-212ENST00000486549 ZNF804AQ7Z570 1209 aa18.37■□□□□ 0.53
USP4-212ENST00000486549 CREBZFQ9NS37 354 aa18.37■□□□□ 0.53
USP4-212ENST00000486549 ZNF646O15015 1829 aaPredicted RBP18.37■□□□□ 0.53
USP4-212ENST00000486549 PNMA6EA0A0J9YXQ4 647 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 SHTN1A0MZ66 631 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 USP17L3A6NCW0 530 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 USP17L4A6NCW7 530 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 PDE8BO95263 885 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 C20orf194Q5TEA3 1177 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 C15orf52Q6ZUT6 534 aaKnown RBP18.36■□□□□ 0.53
USP4-212ENST00000486549 USP50Q70EL3 339 aaPredicted RBP18.36■□□□□ 0.53
USP4-212ENST00000486549 USP17L1Q7RTZ2 530 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 ATG9AQ7Z3C6 839 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 VGLL2Q8N8G2 317 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 COPRSQ9NQ92 184 aa18.36■□□□□ 0.53
USP4-212ENST00000486549 ADAMTSL1Q8N6G6 1762 aa18.35■□□□□ 0.53
USP4-212ENST00000486549 CIAO1O76071 339 aa18.35■□□□□ 0.53
USP4-212ENST00000486549 VIL1P09327 827 aaKnown RBP18.35■□□□□ 0.53
USP4-212ENST00000486549 GYG1P46976 350 aa18.35■□□□□ 0.53
USP4-212ENST00000486549 MICALL2Q8IY33 904 aa18.35■□□□□ 0.53
USP4-212ENST00000486549 JMYQ8N9B5 988 aa18.35■□□□□ 0.53
USP4-212ENST00000486549 CD209Q9NNX6 404 aa18.35■□□□□ 0.53
USP4-212ENST00000486549 CNOT7Q9UIV1 285 aaKnown RBP18.35■□□□□ 0.53
USP4-212ENST00000486549 RPS12P25398 132 aaKnown RBP18.34■□□□□ 0.53
USP4-212ENST00000486549 PUM3Q15397 648 aaKnown RBP18.34■□□□□ 0.53
USP4-212ENST00000486549 RSBN1LQ6PCB5 846 aaPredicted RBP18.34■□□□□ 0.53
USP4-212ENST00000486549 MXD3Q9BW11 206 aa18.34■□□□□ 0.53
USP4-212ENST00000486549 ADARB2Q9NS39 739 aaKnown RBP18.34■□□□□ 0.53
USP4-212ENST00000486549 FBXO3Q9UK99 471 aa18.34■□□□□ 0.53
USP4-212ENST00000486549 DDX19BQ9UMR2 479 aa18.34■□□□□ 0.53
USP4-212ENST00000486549 H7C1D1 291 aa18.33■□□□□ 0.52
USP4-212ENST00000486549 IL15P40933 162 aaPredicted RBP18.33■□□□□ 0.52
USP4-212ENST00000486549 GTF2IP78347 998 aa18.33■□□□□ 0.52
USP4-212ENST00000486549 HTRA3P83110 453 aa18.33■□□□□ 0.52
USP4-212ENST00000486549 DPF2Q92785 391 aa18.33■□□□□ 0.52
USP4-212ENST00000486549 CEP126Q9P2H0 1117 aa18.33■□□□□ 0.52
USP4-212ENST00000486549 JAG2Q9Y219 1238 aa18.33■□□□□ 0.52
USP4-212ENST00000486549 PASKQ96RG2 1323 aa18.32■□□□□ 0.52
USP4-212ENST00000486549 IFIT1P09914 478 aaKnown RBP18.32■□□□□ 0.52
USP4-212ENST00000486549 HIBADHP31937 336 aaKnown RBP18.32■□□□□ 0.52
USP4-212ENST00000486549 ATP8B2P98198 1209 aa18.32■□□□□ 0.52
USP4-212ENST00000486549 PDE3AQ14432 1141 aa18.32■□□□□ 0.52
USP4-212ENST00000486549 DACT2Q5SW24 774 aa18.32■□□□□ 0.52
USP4-212ENST00000486549 TTLL5Q6EMB2 1281 aa18.32■□□□□ 0.52
USP4-212ENST00000486549 VPS37DQ86XT2 251 aa18.32■□□□□ 0.52
USP4-212ENST00000486549 CNTROBQ8N137 903 aa18.32■□□□□ 0.52
USP4-212ENST00000486549 FAM84BQ96KN1 310 aaPredicted RBP18.32■□□□□ 0.52
USP4-212ENST00000486549 TMEM88BA6NKF7 163 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 SLC5A1P13866 664 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 IL1R1P14778 569 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 ATP2B3Q16720 1220 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 CAVIN4Q5BKX8 364 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 RBM26Q5T8P6 1007 aaKnown RBP18.31■□□□□ 0.52
USP4-212ENST00000486549 STRIP1Q5VSL9 837 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 SAMD7Q7Z3H4 446 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 AGBL3Q8NEM8 1001 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 TRPM4Q8TD43 1214 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 MYH13Q9UKX3 1938 aa18.31■□□□□ 0.52
USP4-212ENST00000486549 ITGBL1O95965 494 aaPredicted RBP18.3■□□□□ 0.52
USP4-212ENST00000486549 FGFR2P21802 821 aa18.3■□□□□ 0.52
USP4-212ENST00000486549 RRP1P56182 461 aaKnown RBP18.3■□□□□ 0.52
USP4-212ENST00000486549 G3BP1Q13283 466 aaKnown RBP eCLIP18.3■□□□□ 0.52
USP4-212ENST00000486549 POLA2Q14181 598 aa18.3■□□□□ 0.52
USP4-212ENST00000486549 TBC1D10BQ4KMP7 808 aaPredicted RBP18.3■□□□□ 0.52
USP4-212ENST00000486549 MAP1SQ66K74 1059 aaPredicted RBP18.3■□□□□ 0.52
USP4-212ENST00000486549 CEP85Q6P2H3 762 aa18.3■□□□□ 0.52
USP4-212ENST00000486549 LPIN2Q92539 896 aa18.3■□□□□ 0.52
USP4-212ENST00000486549 IQSEC3Q9UPP2 1182 aaPredicted RBP18.3■□□□□ 0.52
USP4-212ENST00000486549 ZNF609O15014 1411 aa18.3■□□□□ 0.52
USP4-212ENST00000486549 ARAP2Q8WZ64 1704 aa18.29■□□□□ 0.52
USP4-212ENST00000486549 BCAMP50895 628 aa18.29■□□□□ 0.52
USP4-212ENST00000486549 TFCP2Q12800 502 aa18.29■□□□□ 0.52
USP4-212ENST00000486549 OS9Q13438 667 aaPredicted RBP18.29■□□□□ 0.52
USP4-212ENST00000486549 SSH3Q8TE77 659 aa18.29■□□□□ 0.52
USP4-212ENST00000486549 MYO3BQ8WXR4 1341 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms