RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 CCDC85AQ96PX6 553 aaPredicted RBP16.75■□□□□ 0.27
HDAC6-227ENST00000485102 MYH3P11055 1940 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 MYO3BQ8WXR4 1341 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 H7C1W4 665 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 CCT4P50991 539 aaKnown RBP16.74■□□□□ 0.27
HDAC6-227ENST00000485102 NEXNQ0ZGT2 675 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 CCDC27Q2M243 656 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 DACT2Q5SW24 774 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 TSPYL6Q8N831 410 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 PLA2G12BQ9BX93 195 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 COA1Q9GZY4 146 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 LEMD3Q9Y2U8 911 aa16.74■□□□□ 0.27
HDAC6-227ENST00000485102 NCBP3Q53F19 620 aaKnown RBP16.73■□□□□ 0.27
HDAC6-227ENST00000485102 NOM1Q5C9Z4 860 aaKnown RBP16.73■□□□□ 0.27
HDAC6-227ENST00000485102 OGFOD1Q8N543 542 aa16.73■□□□□ 0.27
HDAC6-227ENST00000485102 GREM2Q9H772 168 aa16.73■□□□□ 0.27
HDAC6-227ENST00000485102 WTIPA6NIX2 430 aaPredicted RBP16.72■□□□□ 0.27
HDAC6-227ENST00000485102 NEURL1BA8MQ27 555 aa16.72■□□□□ 0.27
HDAC6-227ENST00000485102 WNT10BO00744 389 aa16.72■□□□□ 0.27
HDAC6-227ENST00000485102 CTU1Q7Z7A3 348 aaKnown RBP16.72■□□□□ 0.27
HDAC6-227ENST00000485102 STK31Q9BXU1 1019 aa16.72■□□□□ 0.27
HDAC6-227ENST00000485102 TM4SF4P48230 202 aa16.71■□□□□ 0.27
HDAC6-227ENST00000485102 NBPF9Q3BBW0 867 aa16.71■□□□□ 0.27
HDAC6-227ENST00000485102 ZNF646O15015 1829 aaPredicted RBP16.7■□□□□ 0.26
HDAC6-227ENST00000485102 CSF1RP07333 972 aa16.7■□□□□ 0.26
HDAC6-227ENST00000485102 PKN2Q16513 984 aaKnown RBP16.7■□□□□ 0.26
HDAC6-227ENST00000485102 CWF19L2Q2TBE0 894 aaKnown RBP16.7■□□□□ 0.26
HDAC6-227ENST00000485102 ANKRD2Q9GZV1 360 aa16.7■□□□□ 0.26
HDAC6-227ENST00000485102 CACNA1FO60840 1977 aa16.69■□□□□ 0.26
HDAC6-227ENST00000485102 IGHMBP2P38935 993 aaKnown RBP16.69■□□□□ 0.26
HDAC6-227ENST00000485102 CASP7P55210 303 aa16.69■□□□□ 0.26
HDAC6-227ENST00000485102 TXNRD3Q86VQ6 643 aa16.69■□□□□ 0.26
HDAC6-227ENST00000485102 ZBED3Q96IU2 234 aaPredicted RBP16.69■□□□□ 0.26
HDAC6-227ENST00000485102 CFHR5Q9BXR6 569 aa16.69■□□□□ 0.26
HDAC6-227ENST00000485102 ZNF804BA4D1E1 1349 aa16.69■□□□□ 0.26
HDAC6-227ENST00000485102 IL16Q14005 1332 aa16.69■□□□□ 0.26
HDAC6-227ENST00000485102 UBE2Q2LH0YL09 131 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 TNRC18O15417 2968 aaPredicted RBP16.68■□□□□ 0.26
HDAC6-227ENST00000485102 SLC4A2P04920 1241 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 NF2P35240 595 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 GCKRQ14397 625 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 TWISTNBQ3B726 338 aaPredicted RBP16.68■□□□□ 0.26
HDAC6-227ENST00000485102 TTLL5Q6EMB2 1281 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 MOB2Q70IA6 237 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 UBE3BQ7Z3V4 1068 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 WWC1Q8IX03 1113 aa16.68■□□□□ 0.26
HDAC6-227ENST00000485102 ITGA6P23229 1130 aa16.67■□□□□ 0.26
HDAC6-227ENST00000485102 G2E3Q7L622 706 aa16.67■□□□□ 0.26
HDAC6-227ENST00000485102 APOBEC3FQ8IUX4 373 aaKnown RBP16.67■□□□□ 0.26
HDAC6-227ENST00000485102 TSR2Q969E8 191 aaKnown RBP16.67■□□□□ 0.26
HDAC6-227ENST00000485102 MXD3Q9BW11 206 aa16.67■□□□□ 0.26
HDAC6-227ENST00000485102 LDLRAD1Q5T700 205 aa16.66■□□□□ 0.26
HDAC6-227ENST00000485102 PRAMEF18Q5VWM3 479 aa16.66■□□□□ 0.26
HDAC6-227ENST00000485102 C15orf52Q6ZUT6 534 aaKnown RBP16.66■□□□□ 0.26
HDAC6-227ENST00000485102 LINS1Q8NG48 757 aa16.66■□□□□ 0.26
HDAC6-227ENST00000485102 HDAC9Q9UKV0 1011 aa16.66■□□□□ 0.26
HDAC6-227ENST00000485102 FLIIQ13045 1269 aa16.65■□□□□ 0.26
HDAC6-227ENST00000485102 ARMC9Q7Z3E5 817 aa16.65■□□□□ 0.26
HDAC6-227ENST00000485102 MTMR14Q8NCE2 650 aa16.65■□□□□ 0.26
HDAC6-227ENST00000485102 ZNF296Q8WUU4 475 aaPredicted RBP16.65■□□□□ 0.26
HDAC6-227ENST00000485102 MPHOSPH8Q99549 860 aa16.65■□□□□ 0.26
HDAC6-227ENST00000485102 MYH16Q9H6N6 1097 aa16.65■□□□□ 0.26
HDAC6-227ENST00000485102 SCAF8Q9UPN6 1271 aaKnown RBP16.65■□□□□ 0.26
HDAC6-227ENST00000485102 SPEF2Q9C093 1822 aa16.65■□□□□ 0.26
HDAC6-227ENST00000485102 UNCXA6NJT0 531 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 GPR25O00155 361 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 SREBF2Q12772 1141 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 MAP3K11Q16584 847 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 DNAAF4Q8WXU2 420 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 CD209Q9NNX6 404 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 PCDH10Q9P2E7 1040 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 HPS5Q9UPZ3 1129 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 IRS2Q9Y4H2 1338 aa16.64■□□□□ 0.25
HDAC6-227ENST00000485102 COL1A1P02452 1464 aaPredicted RBP16.63■□□□□ 0.25
HDAC6-227ENST00000485102 TBC1D8O95759 1140 aa16.63■□□□□ 0.25
HDAC6-227ENST00000485102 SOX10P56693 466 aa16.63■□□□□ 0.25
HDAC6-227ENST00000485102 GTF2IP78347 998 aa16.63■□□□□ 0.25
HDAC6-227ENST00000485102 PTPN12Q05209 780 aaKnown RBP16.63■□□□□ 0.25
HDAC6-227ENST00000485102 CHRNDQ07001 517 aa16.63■□□□□ 0.25
HDAC6-227ENST00000485102 TTLL12Q14166 644 aaPredicted RBP16.63■□□□□ 0.25
HDAC6-227ENST00000485102 KIAA0825Q8IV33 1275 aa16.63■□□□□ 0.25
HDAC6-227ENST00000485102 SASH1O94885 1247 aa16.62■□□□□ 0.25
HDAC6-227ENST00000485102 KLRK1P26718 216 aa16.62■□□□□ 0.25
HDAC6-227ENST00000485102 INHBEP58166 350 aa16.62■□□□□ 0.25
HDAC6-227ENST00000485102 FKBP1AP62942 108 aaKnown RBP16.62■□□□□ 0.25
HDAC6-227ENST00000485102 FBXW7Q969H0 707 aa16.62■□□□□ 0.25
HDAC6-227ENST00000485102 PPP2R3BQ9Y5P8 575 aa16.62■□□□□ 0.25
HDAC6-227ENST00000485102 ANKRD18BA2A2Z9 1011 aa16.61■□□□□ 0.25
HDAC6-227ENST00000485102 ALDH1A1P00352 501 aa16.61■□□□□ 0.25
HDAC6-227ENST00000485102 IL1R1P14778 569 aa16.61■□□□□ 0.25
HDAC6-227ENST00000485102 FKBP5Q13451 457 aaPredicted RBP16.61■□□□□ 0.25
HDAC6-227ENST00000485102 SPRYD7Q5W111 196 aa16.61■□□□□ 0.25
HDAC6-227ENST00000485102 DEFB129Q9H1M3 183 aa16.61■□□□□ 0.25
HDAC6-227ENST00000485102 VAMP4O75379 141 aa16.6■□□□□ 0.25
HDAC6-227ENST00000485102 KCNJ4P48050 445 aa16.6■□□□□ 0.25
HDAC6-227ENST00000485102 DLGAP5Q15398 846 aa16.6■□□□□ 0.25
HDAC6-227ENST00000485102 FBXO46Q6PJ61 603 aaPredicted RBP16.6■□□□□ 0.25
HDAC6-227ENST00000485102 CERS5Q8N5B7 392 aa16.6■□□□□ 0.25
HDAC6-227ENST00000485102 FKTNO75072 461 aa16.59■□□□□ 0.25
HDAC6-227ENST00000485102 ZBTB48P10074 688 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms