RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ABL1P00519 1130 aa6.55□□□□□ -1.36
VPS50-216ENST00000484954 PDGFAP04085 211 aa6.55□□□□□ -1.36
VPS50-216ENST00000484954 ATP11AP98196 1134 aa6.55□□□□□ -1.36
VPS50-216ENST00000484954 DZIP1LQ8IYY4 767 aaKnown RBP6.55□□□□□ -1.36
VPS50-216ENST00000484954 ELP3Q9H9T3 547 aa6.55□□□□□ -1.36
VPS50-216ENST00000484954 TRIM33Q9UPN9 1127 aa6.55□□□□□ -1.36
VPS50-216ENST00000484954 USTQ9Y2C2 406 aa6.55□□□□□ -1.36
VPS50-216ENST00000484954 ADAMTS4O75173 837 aa6.54□□□□□ -1.36
VPS50-216ENST00000484954 SERPINB4P48594 390 aa6.54□□□□□ -1.36
VPS50-216ENST00000484954 GDF6Q6KF10 455 aaPredicted RBP6.54□□□□□ -1.36
VPS50-216ENST00000484954 TTC9Q92623 222 aa6.54□□□□□ -1.36
VPS50-216ENST00000484954 ABI2Q9NYB9 513 aaPredicted RBP6.54□□□□□ -1.36
VPS50-216ENST00000484954 KANSL3Q9P2N6 904 aa6.54□□□□□ -1.36
VPS50-216ENST00000484954 POLIQ9UNA4 740 aa6.54□□□□□ -1.36
VPS50-216ENST00000484954 FNDC3AQ9Y2H6 1198 aaKnown RBP6.54□□□□□ -1.36
VPS50-216ENST00000484954 KIAA1324LA8MWY0 1029 aaPredicted RBP6.53□□□□□ -1.36
VPS50-216ENST00000484954 DLL1O00548 723 aa6.53□□□□□ -1.36
VPS50-216ENST00000484954 GHRHP01286 108 aa6.53□□□□□ -1.36
VPS50-216ENST00000484954 ACPPP15309 386 aa6.53□□□□□ -1.36
VPS50-216ENST00000484954 NPR3P17342 541 aa6.53□□□□□ -1.36
VPS50-216ENST00000484954 ARID4AP29374 1257 aaPredicted RBP6.53□□□□□ -1.36
VPS50-216ENST00000484954 TTC39BQ5VTQ0 682 aaPredicted RBP6.53□□□□□ -1.36
VPS50-216ENST00000484954 ZNF438Q7Z4V0 828 aa6.53□□□□□ -1.36
VPS50-216ENST00000484954 FZD6O60353 706 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 IGLV1-40P01703 118 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 MZF1P28698 734 aaPredicted RBP6.52□□□□□ -1.37
VPS50-216ENST00000484954 C8orf34Q49A92 452 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 PDE12Q6L8Q7 609 aaKnown RBP6.52□□□□□ -1.37
VPS50-216ENST00000484954 ERICH6Q7L0X2 663 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 AGGF1Q8N302 714 aaeCLIP6.52□□□□□ -1.37
VPS50-216ENST00000484954 C1orf127Q8N9H9 656 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 RASSF4Q9H2L5 321 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 CHRDQ9H2X0 955 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 CCDC87Q9NVE4 849 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 RAXQ9Y2V3 346 aa6.52□□□□□ -1.37
VPS50-216ENST00000484954 F8W735 103 aaPredicted RBP6.51□□□□□ -1.37
VPS50-216ENST00000484954 KIF4AO95239 1232 aa6.51□□□□□ -1.37
VPS50-216ENST00000484954 GLB1P16278 677 aa6.51□□□□□ -1.37
VPS50-216ENST00000484954 FKBP4Q02790 459 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS50-216ENST00000484954 HYAL2Q12891 473 aa6.51□□□□□ -1.37
VPS50-216ENST00000484954 ECM1Q16610 540 aa6.51□□□□□ -1.37
VPS50-216ENST00000484954 IL22RA1Q8N6P7 574 aa6.51□□□□□ -1.37
VPS50-216ENST00000484954 MRPL18Q9H0U6 180 aaKnown RBP6.51□□□□□ -1.37
VPS50-216ENST00000484954 TRPA1O75762 1119 aa6.5□□□□□ -1.37
VPS50-216ENST00000484954 FAM13AO94988 1023 aa6.5□□□□□ -1.37
VPS50-216ENST00000484954 AAMPQ13685 434 aa6.5□□□□□ -1.37
VPS50-216ENST00000484954 LCE4AQ5TA78 99 aa6.5□□□□□ -1.37
VPS50-216ENST00000484954 CEP120Q8N960 986 aa6.5□□□□□ -1.37
VPS50-216ENST00000484954 LACRTQ9GZZ8 138 aa6.5□□□□□ -1.37
VPS50-216ENST00000484954 SF3B2Q13435 895 aaKnown RBP6.49□□□□□ -1.37
VPS50-216ENST00000484954 CEP135Q66GS9 1140 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 ALKBH2Q6NS38 261 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 TXNDC11Q6PKC3 985 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 XKR5Q6UX68 686 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 HHIPQ96QV1 700 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 RBSNQ9H1K0 784 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 STOML1Q9UBI4 398 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 SALL4Q9UJQ4 1053 aa6.49□□□□□ -1.37
VPS50-216ENST00000484954 FOXD3Q9UJU5 478 aaPredicted RBP6.49□□□□□ -1.37
VPS50-216ENST00000484954 H3BRB1 525 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 EREGO14944 169 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 GSC2O15499 205 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 ICMTO60725 284 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 CDC25BP30305 580 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 SETDB1Q15047 1291 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 NCAPG2Q86XI2 1143 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 TMEM130Q8N3G9 435 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 TUT1Q9H6E5 874 aaKnown RBP6.48□□□□□ -1.37
VPS50-216ENST00000484954 SH2B1Q9NRF2 756 aaPredicted RBP6.48□□□□□ -1.37
VPS50-216ENST00000484954 MTMR7Q9Y216 660 aa6.48□□□□□ -1.37
VPS50-216ENST00000484954 NFKBIEO00221 500 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 TNFRSF21O75509 655 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 PCSK2P16519 638 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 CES1P23141 567 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 JAG1P78504 1218 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 ARHGAP4P98171 946 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 TXNDC2Q86VQ3 553 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 ZDHHC13Q8IUH4 622 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 GALNT11Q8NCW6 608 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 SPACA7Q96KW9 195 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 POP1Q99575 1024 aaKnown RBP6.47□□□□□ -1.37
VPS50-216ENST00000484954 KRTAP9-8Q9BYQ0 159 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 PBX4Q9BYU1 374 aa6.47□□□□□ -1.37
VPS50-216ENST00000484954 LINC01387J3KSC0 135 aa6.46□□□□□ -1.38
VPS50-216ENST00000484954 TM4SF5O14894 197 aa6.46□□□□□ -1.38
VPS50-216ENST00000484954 RPLP1P05386 114 aaKnown RBP6.46□□□□□ -1.38
VPS50-216ENST00000484954 SPINK2P20155 84 aa6.46□□□□□ -1.38
VPS50-216ENST00000484954 EPHA1P21709 976 aa6.46□□□□□ -1.38
VPS50-216ENST00000484954 GJD3Q8N144 294 aa6.46□□□□□ -1.38
VPS50-216ENST00000484954 UBL7Q96S82 380 aaPredicted RBP6.46□□□□□ -1.38
VPS50-216ENST00000484954 EGFL7Q9UHF1 273 aa6.46□□□□□ -1.38
VPS50-216ENST00000484954 SMNDC1O75940 238 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS50-216ENST00000484954 GRIK1P39086 918 aa6.45□□□□□ -1.38
VPS50-216ENST00000484954 B4GALNT3Q6L9W6 998 aa6.45□□□□□ -1.38
VPS50-216ENST00000484954 Q6ZS46 218 aa6.45□□□□□ -1.38
VPS50-216ENST00000484954 CARD10Q9BWT7 1032 aa6.45□□□□□ -1.38
VPS50-216ENST00000484954 LATS2Q9NRM7 1088 aa6.45□□□□□ -1.38
VPS50-216ENST00000484954 DZANK1Q9NVP4 752 aa6.45□□□□□ -1.38
VPS50-216ENST00000484954 KCNK4Q9NYG8 393 aa6.45□□□□□ -1.38
VPS50-216ENST00000484954 PPME1Q9Y570 386 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms