RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 RASSF4Q9H2L5 321 aa12.01□□□□□ -0.49
MCF2-207ENST00000483690 ZFYVE1Q9HBF4 777 aa12.01□□□□□ -0.49
MCF2-207ENST00000483690 MBIPQ9NS73 344 aa12.01□□□□□ -0.49
MCF2-207ENST00000483690 GGT7Q9UJ14 662 aa12.01□□□□□ -0.49
MCF2-207ENST00000483690 PPM1HQ9ULR3 514 aa12.01□□□□□ -0.49
MCF2-207ENST00000483690 H3BM21 787 aa12□□□□□ -0.49
MCF2-207ENST00000483690 ATP11AP98196 1134 aa12□□□□□ -0.49
MCF2-207ENST00000483690 HHIPQ96QV1 700 aa12□□□□□ -0.49
MCF2-207ENST00000483690 CCSER2Q9H7U1 834 aa12□□□□□ -0.49
MCF2-207ENST00000483690 SLC6A14Q9UN76 642 aa12□□□□□ -0.49
MCF2-207ENST00000483690 NFKBIEO00221 500 aa11.99□□□□□ -0.49
MCF2-207ENST00000483690 SMNDC1O75940 238 aaKnown RBP eCLIP11.99□□□□□ -0.49
MCF2-207ENST00000483690 CPB1P15086 417 aa11.99□□□□□ -0.49
MCF2-207ENST00000483690 GRIA4P48058 902 aa11.99□□□□□ -0.49
MCF2-207ENST00000483690 PTPN12Q05209 780 aaKnown RBP11.99□□□□□ -0.49
MCF2-207ENST00000483690 MICALL1Q8N3F8 863 aa11.99□□□□□ -0.49
MCF2-207ENST00000483690 GPR161Q8N6U8 529 aaKnown RBP11.99□□□□□ -0.49
MCF2-207ENST00000483690 ASAP3Q8TDY4 903 aa11.99□□□□□ -0.49
MCF2-207ENST00000483690 NXPE3Q969Y0 559 aa11.99□□□□□ -0.49
MCF2-207ENST00000483690 ADH7P40394 386 aa11.98□□□□□ -0.49
MCF2-207ENST00000483690 NAALADL2Q58DX5 795 aa11.98□□□□□ -0.49
MCF2-207ENST00000483690 KLF15Q9UIH9 416 aa11.98□□□□□ -0.49
MCF2-207ENST00000483690 ADARB2-AS1A8MUL3 147 aa11.97□□□□□ -0.49
MCF2-207ENST00000483690 METTL12A8MUP2 240 aa11.97□□□□□ -0.49
MCF2-207ENST00000483690 CCDC85BQ15834 202 aaPredicted RBP11.97□□□□□ -0.49
MCF2-207ENST00000483690 USP48Q86UV5 1035 aa11.97□□□□□ -0.49
MCF2-207ENST00000483690 NOC4LQ9BVI4 516 aaKnown RBP11.97□□□□□ -0.49
MCF2-207ENST00000483690 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.97□□□□□ -0.49
MCF2-207ENST00000483690 A0A096LPE4 126 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 A0A1W2PPZ6 126 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 NEURL1BA8MQ27 555 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 ITPKAP23677 461 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 SPRED3Q2MJR0 410 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 ZNF394Q53GI3 561 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 CEP135Q66GS9 1140 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 ZNF787Q6DD87 383 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 ELMSAN1Q6PJG2 1045 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 ANKRD24Q8TF21 1146 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 PLD4Q96BZ4 506 aa11.96□□□□□ -0.49
MCF2-207ENST00000483690 VSIG8P0DPA2 414 aa11.95□□□□□ -0.5
MCF2-207ENST00000483690 ZNF654Q8IZM8 581 aa11.95□□□□□ -0.5
MCF2-207ENST00000483690 USP35Q9P2H5 1018 aa11.95□□□□□ -0.5
MCF2-207ENST00000483690 IGF1RP08069 1367 aa11.94□□□□□ -0.5
MCF2-207ENST00000483690 IGSF3O75054 1194 aa11.94□□□□□ -0.5
MCF2-207ENST00000483690 PERM1Q5SV97 790 aa11.94□□□□□ -0.5
MCF2-207ENST00000483690 FCHSD1Q86WN1 690 aa11.94□□□□□ -0.5
MCF2-207ENST00000483690 POP1Q99575 1024 aaKnown RBP11.94□□□□□ -0.5
MCF2-207ENST00000483690 COL25A1Q9BXS0 654 aaPredicted RBP11.94□□□□□ -0.5
MCF2-207ENST00000483690 DDX41Q9UJV9 622 aaKnown RBP11.94□□□□□ -0.5
MCF2-207ENST00000483690 GGA1Q9UJY5 639 aa11.94□□□□□ -0.5
MCF2-207ENST00000483690 NAGPAQ9UK23 515 aa11.94□□□□□ -0.5
MCF2-207ENST00000483690 PCDHGB7Q9Y5F8 929 aa11.94□□□□□ -0.5
MCF2-207ENST00000483690 FBXO24O75426 580 aa11.93□□□□□ -0.5
MCF2-207ENST00000483690 TPTE2Q6XPS3 522 aa11.93□□□□□ -0.5
MCF2-207ENST00000483690 ERMP1Q7Z2K6 904 aa11.93□□□□□ -0.5
MCF2-207ENST00000483690 GOLGA6L1Q8N7Z2 621 aa11.93□□□□□ -0.5
MCF2-207ENST00000483690 SLC16A10Q8TF71 515 aa11.93□□□□□ -0.5
MCF2-207ENST00000483690 CEP44Q9C0F1 390 aa11.93□□□□□ -0.5
MCF2-207ENST00000483690 SMG9Q9H0W8 520 aaKnown RBP11.93□□□□□ -0.5
MCF2-207ENST00000483690 ACBD3Q9H3P7 528 aa11.93□□□□□ -0.5
MCF2-207ENST00000483690 ELOA3CA0A087WX78 387 aaPredicted RBP11.92□□□□□ -0.5
MCF2-207ENST00000483690 ELOA3DA6NLF2 546 aaPredicted RBP11.92□□□□□ -0.5
MCF2-207ENST00000483690 PTPRAP18433 802 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 ALAS2P22557 587 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 ELOA3BQ3SY89 546 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 RPS26P11Q5JNZ5 115 aaPredicted RBP11.92□□□□□ -0.5
MCF2-207ENST00000483690 SV2BQ7L1I2 683 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 ELOA3Q8NG57 546 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 BSNDQ8WZ55 320 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 MDFIQ99750 246 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 ZNF576Q9H609 170 aa11.92□□□□□ -0.5
MCF2-207ENST00000483690 GDF2Q9UK05 429 aaPredicted RBP11.92□□□□□ -0.5
MCF2-207ENST00000483690 FAM177BA6PVY3 158 aa11.91□□□□□ -0.5
MCF2-207ENST00000483690 TERTO14746 1132 aaKnown RBP11.91□□□□□ -0.5
MCF2-207ENST00000483690 RACK1P63244 317 aaKnown RBP11.91□□□□□ -0.5
MCF2-207ENST00000483690 PWP1Q13610 501 aa11.91□□□□□ -0.5
MCF2-207ENST00000483690 RNFT1Q5M7Z0 435 aa11.91□□□□□ -0.5
MCF2-207ENST00000483690 LPIN3Q9BQK8 851 aa11.91□□□□□ -0.5
MCF2-207ENST00000483690 MUC3BQ9H195 1237 aa11.91□□□□□ -0.5
MCF2-207ENST00000483690 CAPN10Q9HC96 672 aa11.91□□□□□ -0.5
MCF2-207ENST00000483690 SRA1Q9HD15 236 aaKnown RBP11.91□□□□□ -0.5
MCF2-207ENST00000483690 FRRS1LQ9P0K9 344 aa11.91□□□□□ -0.5
MCF2-207ENST00000483690 RLBP1P12271 317 aa11.9□□□□□ -0.5
MCF2-207ENST00000483690 GNL2Q13823 731 aaKnown RBP11.9□□□□□ -0.5
MCF2-207ENST00000483690 PSAPL1Q6NUJ1 521 aa11.9□□□□□ -0.5
MCF2-207ENST00000483690 SREK1Q8WXA9 508 aaKnown RBP11.9□□□□□ -0.5
MCF2-207ENST00000483690 COPRSQ9NQ92 184 aa11.9□□□□□ -0.5
MCF2-207ENST00000483690 KBTBD4Q9NVX7 518 aa11.9□□□□□ -0.5
MCF2-207ENST00000483690 SLCO4C1Q6ZQN7 724 aa11.89□□□□□ -0.51
MCF2-207ENST00000483690 RELL1Q8IUW5 271 aa11.89□□□□□ -0.51
MCF2-207ENST00000483690 TINF2Q9BSI4 451 aa11.89□□□□□ -0.51
MCF2-207ENST00000483690 RSRP1Q9BUV0 290 aa11.89□□□□□ -0.51
MCF2-207ENST00000483690 CLEC4MQ9H2X3 399 aaPredicted RBP11.89□□□□□ -0.51
MCF2-207ENST00000483690 MAP3K10Q02779 954 aa11.88□□□□□ -0.51
MCF2-207ENST00000483690 SRSF11Q05519 484 aaKnown RBP11.88□□□□□ -0.51
MCF2-207ENST00000483690 LACRTQ9GZZ8 138 aa11.88□□□□□ -0.51
MCF2-207ENST00000483690 SEC31BQ9NQW1 1179 aa11.88□□□□□ -0.51
MCF2-207ENST00000483690 GPN3Q9UHW5 284 aaPredicted RBP11.88□□□□□ -0.51
MCF2-207ENST00000483690 TRIM33Q9UPN9 1127 aa11.88□□□□□ -0.51
MCF2-207ENST00000483690 INPP5FQ9Y2H2 1132 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms