RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 LATS2Q9NRM7 1088 aa10.7□□□□□ -0.7
USP40-213ENST00000483216 BAG6P46379 1132 aa10.69□□□□□ -0.7
USP40-213ENST00000483216 GSK3AP49840 483 aa10.69□□□□□ -0.7
USP40-213ENST00000483216 TRAPPC3LQ5T215 181 aa10.69□□□□□ -0.7
USP40-213ENST00000483216 DNAJC14Q6Y2X3 702 aaPredicted RBP10.69□□□□□ -0.7
USP40-213ENST00000483216 WFDC8Q8IUA0 241 aa10.69□□□□□ -0.7
USP40-213ENST00000483216 ANKRD33BA6NCL7 494 aa10.68□□□□□ -0.7
USP40-213ENST00000483216 PDE2AO00408 941 aaPredicted RBP10.68□□□□□ -0.7
USP40-213ENST00000483216 COL8A1P27658 744 aa10.68□□□□□ -0.7
USP40-213ENST00000483216 COL19A1Q14993 1142 aa10.68□□□□□ -0.7
USP40-213ENST00000483216 KIAA0319Q5VV43 1072 aa10.68□□□□□ -0.7
USP40-213ENST00000483216 IL22RA1Q8N6P7 574 aa10.68□□□□□ -0.7
USP40-213ENST00000483216 NXPE3Q969Y0 559 aa10.68□□□□□ -0.7
USP40-213ENST00000483216 ADAM19Q9H013 955 aa10.68□□□□□ -0.7
USP40-213ENST00000483216 PNMA6FA0A0J9YX94 578 aa10.67□□□□□ -0.7
USP40-213ENST00000483216 A0A1W2PP55 124 aa10.67□□□□□ -0.7
USP40-213ENST00000483216 TRPA1O75762 1119 aa10.67□□□□□ -0.7
USP40-213ENST00000483216 DMRTC2Q8IXT2 367 aaPredicted RBP10.67□□□□□ -0.7
USP40-213ENST00000483216 NPHS2Q9NP85 383 aa10.67□□□□□ -0.7
USP40-213ENST00000483216 PTPRAP18433 802 aa10.66□□□□□ -0.7
USP40-213ENST00000483216 RASSF7Q02833 373 aa10.66□□□□□ -0.7
USP40-213ENST00000483216 TRIM26Q12899 539 aaPredicted RBP10.66□□□□□ -0.7
USP40-213ENST00000483216 DTWD1Q8N5C7 304 aa10.66□□□□□ -0.7
USP40-213ENST00000483216 HHIPQ96QV1 700 aa10.66□□□□□ -0.7
USP40-213ENST00000483216 BHLHE41Q9C0J9 482 aaPredicted RBP10.66□□□□□ -0.7
USP40-213ENST00000483216 MUC3BQ9H195 1237 aa10.66□□□□□ -0.7
USP40-213ENST00000483216 A0A0A0MRY4 1105 aa10.65□□□□□ -0.7
USP40-213ENST00000483216 ERCC3P19447 782 aa10.65□□□□□ -0.7
USP40-213ENST00000483216 CDC27P30260 824 aa10.65□□□□□ -0.7
USP40-213ENST00000483216 MAPK8P45983 427 aa10.65□□□□□ -0.7
USP40-213ENST00000483216 TRIM28Q13263 835 aaKnown RBP10.65□□□□□ -0.7
USP40-213ENST00000483216 ADAMTSL4Q6UY14 1074 aa10.65□□□□□ -0.7
USP40-213ENST00000483216 LACRTQ9GZZ8 138 aa10.65□□□□□ -0.7
USP40-213ENST00000483216 P4HBP07237 508 aaKnown RBP10.64□□□□□ -0.71
USP40-213ENST00000483216 RAC1P63000 192 aa10.64□□□□□ -0.71
USP40-213ENST00000483216 PRRT3Q5FWE3 981 aa10.64□□□□□ -0.71
USP40-213ENST00000483216 TMCO4Q5TGY1 634 aa10.64□□□□□ -0.71
USP40-213ENST00000483216 PPME1Q9Y570 386 aa10.64□□□□□ -0.71
USP40-213ENST00000483216 SPATA31C1P0DKV0 1188 aa10.63□□□□□ -0.71
USP40-213ENST00000483216 CCNJLQ8IV13 435 aa10.63□□□□□ -0.71
USP40-213ENST00000483216 EPS8L3Q8TE67 593 aaKnown RBP10.63□□□□□ -0.71
USP40-213ENST00000483216 FBF1Q8TES7 1133 aa10.63□□□□□ -0.71
USP40-213ENST00000483216 TCF12Q99081 682 aa10.63□□□□□ -0.71
USP40-213ENST00000483216 LIN7BQ9HAP6 207 aa10.63□□□□□ -0.71
USP40-213ENST00000483216 SRA1Q9HD15 236 aaKnown RBP10.63□□□□□ -0.71
USP40-213ENST00000483216 FAM177BA6PVY3 158 aa10.62□□□□□ -0.71
USP40-213ENST00000483216 ALG1LQ6GMV1 187 aa10.62□□□□□ -0.71
USP40-213ENST00000483216 NPAS4Q8IUM7 802 aa10.62□□□□□ -0.71
USP40-213ENST00000483216 FMR1NBQ8N0W7 255 aaPredicted RBP10.62□□□□□ -0.71
USP40-213ENST00000483216 BSNDQ8WZ55 320 aa10.62□□□□□ -0.71
USP40-213ENST00000483216 DCAF5Q96JK2 942 aa10.62□□□□□ -0.71
USP40-213ENST00000483216 NLRP2Q9NX02 1062 aa10.62□□□□□ -0.71
USP40-213ENST00000483216 SOX13Q9UN79 622 aa10.62□□□□□ -0.71
USP40-213ENST00000483216 ATP2B2Q01814 1243 aa10.61□□□□□ -0.71
USP40-213ENST00000483216 FBXO11Q86XK2 927 aa10.61□□□□□ -0.71
USP40-213ENST00000483216 MAP4K3Q8IVH8 894 aa10.61□□□□□ -0.71
USP40-213ENST00000483216 EHD4Q9H223 541 aa10.61□□□□□ -0.71
USP40-213ENST00000483216 SH2B1Q9NRF2 756 aaPredicted RBP10.61□□□□□ -0.71
USP40-213ENST00000483216 FAM229AH3BQW9 127 aa10.6□□□□□ -0.71
USP40-213ENST00000483216 GADD45BO75293 160 aaPredicted RBP10.6□□□□□ -0.71
USP40-213ENST00000483216 GDF11O95390 407 aa10.6□□□□□ -0.71
USP40-213ENST00000483216 ELNP15502 786 aa10.6□□□□□ -0.71
USP40-213ENST00000483216 EPHA1P21709 976 aa10.6□□□□□ -0.71
USP40-213ENST00000483216 TMEM151AQ8N4L1 468 aa10.6□□□□□ -0.71
USP40-213ENST00000483216 DEAF1O75398 565 aaPredicted RBP10.59□□□□□ -0.71
USP40-213ENST00000483216 CABP4P57796 275 aa10.59□□□□□ -0.71
USP40-213ENST00000483216 PRPF40BQ6NWY9 871 aaKnown RBP10.59□□□□□ -0.71
USP40-213ENST00000483216 ASAP3Q8TDY4 903 aa10.59□□□□□ -0.71
USP40-213ENST00000483216 WWC3Q9ULE0 1092 aa10.59□□□□□ -0.71
USP40-213ENST00000483216 TRAK1Q9UPV9 953 aa10.59□□□□□ -0.71
USP40-213ENST00000483216 H3BRJ5 948 aa10.58□□□□□ -0.72
USP40-213ENST00000483216 LINC01387J3KSC0 135 aa10.58□□□□□ -0.72
USP40-213ENST00000483216 LDHBP07195 334 aaKnown RBP10.58□□□□□ -0.72
USP40-213ENST00000483216 FGD1P98174 961 aa10.58□□□□□ -0.72
USP40-213ENST00000483216 SETDB1Q15047 1291 aa10.58□□□□□ -0.72
USP40-213ENST00000483216 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP40-213ENST00000483216 EAPPQ56P03 285 aaPredicted RBP10.58□□□□□ -0.72
USP40-213ENST00000483216 PI16Q6UXB8 463 aa10.58□□□□□ -0.72
USP40-213ENST00000483216 SETDB2Q96T68 719 aa10.58□□□□□ -0.72
USP40-213ENST00000483216 A0A096LPE4 126 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 A0A1W2PPZ6 126 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 KRBA1A5PL33 1030 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 METTL12A8MUP2 240 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 GRIA4P48058 902 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 GRM2Q14416 872 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 FAM117BQ6P1L5 589 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 VN1R5Q7Z5H4 357 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 DCAF11Q8TEB1 546 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 WNT8BQ93098 351 aa10.57□□□□□ -0.72
USP40-213ENST00000483216 GLIS3Q8NEA6 775 aa10.56□□□□□ -0.72
USP40-213ENST00000483216 DLL1O00548 723 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 PRPF40AO75400 957 aaKnown RBP10.55□□□□□ -0.72
USP40-213ENST00000483216 ITPKAP23677 461 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 PIP4K2BP78356 416 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 PTPN12Q05209 780 aaKnown RBP10.55□□□□□ -0.72
USP40-213ENST00000483216 GRIK4Q16099 956 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 SPRED3Q2MJR0 410 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 TXNDC11Q6PKC3 985 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 NACC1Q96RE7 527 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 BCO2Q9BYV7 579 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms