RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 C6orf229H3BNL8 230 aa12.79□□□□□ -0.36
GPNMB-211ENST00000479625 TBC1D8O95759 1140 aa12.79□□□□□ -0.36
GPNMB-211ENST00000479625 RPS12P25398 132 aaKnown RBP12.79□□□□□ -0.36
GPNMB-211ENST00000479625 NFE2L2Q16236 605 aa12.79□□□□□ -0.36
GPNMB-211ENST00000479625 COPS6Q7L5N1 327 aa12.79□□□□□ -0.36
GPNMB-211ENST00000479625 XAGE3Q8WTP9 111 aa12.79□□□□□ -0.36
GPNMB-211ENST00000479625 TSPYL4Q9UJ04 414 aa12.79□□□□□ -0.36
GPNMB-211ENST00000479625 GOLGA2Q08379 1002 aa12.78□□□□□ -0.36
GPNMB-211ENST00000479625 HSP90AB3PQ58FF7 597 aa12.78□□□□□ -0.36
GPNMB-211ENST00000479625 ANGEL2Q5VTE6 544 aaKnown RBP12.78□□□□□ -0.36
GPNMB-211ENST00000479625 TMC4Q7Z404 712 aa12.78□□□□□ -0.36
GPNMB-211ENST00000479625 CCER1Q8TC90 406 aaPredicted RBP12.78□□□□□ -0.36
GPNMB-211ENST00000479625 PLEKHF1Q96S99 279 aa12.78□□□□□ -0.36
GPNMB-211ENST00000479625 HDAC9Q9UKV0 1011 aa12.78□□□□□ -0.36
GPNMB-211ENST00000479625 TCIRG1Q13488 830 aa12.77□□□□□ -0.37
GPNMB-211ENST00000479625 ZNF609O15014 1411 aa12.77□□□□□ -0.37
GPNMB-211ENST00000479625 NEFMP07197 916 aa12.76□□□□□ -0.37
GPNMB-211ENST00000479625 IRX5P78411 483 aaPredicted RBP12.76□□□□□ -0.37
GPNMB-211ENST00000479625 MKRN3Q13064 507 aaKnown RBP12.76□□□□□ -0.37
GPNMB-211ENST00000479625 RTL5Q5HYW3 569 aaPredicted RBP12.76□□□□□ -0.37
GPNMB-211ENST00000479625 TBC1D16Q8TBP0 767 aa12.76□□□□□ -0.37
GPNMB-211ENST00000479625 UBE2Q2LH0YL09 131 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 VIL1P09327 827 aaKnown RBP12.75□□□□□ -0.37
GPNMB-211ENST00000479625 MYH3P11055 1940 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 PDAP1Q13442 181 aaKnown RBP12.75□□□□□ -0.37
GPNMB-211ENST00000479625 SCARF1Q14162 830 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 PKN2Q16513 984 aaKnown RBP12.75□□□□□ -0.37
GPNMB-211ENST00000479625 KRT24Q2M2I5 525 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 PRAMEF18Q5VWM3 479 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 ECM29Q5VYK3 1845 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 FAM89AQ96GI7 184 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 EYA3Q99504 573 aa12.75□□□□□ -0.37
GPNMB-211ENST00000479625 MAPK8IP3Q9UPT6 1336 aa12.74□□□□□ -0.37
GPNMB-211ENST00000479625 GPR25O00155 361 aa12.74□□□□□ -0.37
GPNMB-211ENST00000479625 UFL1O94874 794 aa12.74□□□□□ -0.37
GPNMB-211ENST00000479625 ZNF280AP59817 542 aaPredicted RBP12.74□□□□□ -0.37
GPNMB-211ENST00000479625 FBXO46Q6PJ61 603 aaPredicted RBP12.74□□□□□ -0.37
GPNMB-211ENST00000479625 ATP5J2-PTCD1G3V325 749 aa12.73□□□□□ -0.37
GPNMB-211ENST00000479625 SF3B3Q15393 1217 aaKnown RBP12.73□□□□□ -0.37
GPNMB-211ENST00000479625 HABP4Q5JVS0 413 aaKnown RBP12.73□□□□□ -0.37
GPNMB-211ENST00000479625 RSBN1LQ6PCB5 846 aaPredicted RBP12.73□□□□□ -0.37
GPNMB-211ENST00000479625 R3HDMLQ9H3Y0 253 aa12.73□□□□□ -0.37
GPNMB-211ENST00000479625 CHPF2Q9P2E5 772 aa12.73□□□□□ -0.37
GPNMB-211ENST00000479625 SZT2Q5T011 3432 aa12.73□□□□□ -0.37
GPNMB-211ENST00000479625 OTOFQ9HC10 1997 aa12.72□□□□□ -0.37
GPNMB-211ENST00000479625 PITPNM2Q9BZ72 1349 aa12.72□□□□□ -0.37
GPNMB-211ENST00000479625 FKBP1BP68106 108 aa12.72□□□□□ -0.37
GPNMB-211ENST00000479625 GCC1Q96CN9 775 aa12.72□□□□□ -0.37
GPNMB-211ENST00000479625 ISCA1Q9BUE6 129 aa12.72□□□□□ -0.37
GPNMB-211ENST00000479625 ZC3H12CQ9C0D7 883 aaKnown RBP12.72□□□□□ -0.37
GPNMB-211ENST00000479625 MYOZ2Q9NPC6 264 aa12.72□□□□□ -0.37
GPNMB-211ENST00000479625 SEC31BQ9NQW1 1179 aa12.72□□□□□ -0.37
GPNMB-211ENST00000479625 G3V3G9 751 aa12.71□□□□□ -0.37
GPNMB-211ENST00000479625 TTLL12Q14166 644 aaPredicted RBP12.71□□□□□ -0.37
GPNMB-211ENST00000479625 GMLQ99445 158 aa12.71□□□□□ -0.37
GPNMB-211ENST00000479625 IRS4O14654 1257 aaPredicted RBP12.7□□□□□ -0.38
GPNMB-211ENST00000479625 FKTNO75072 461 aa12.7□□□□□ -0.38
GPNMB-211ENST00000479625 TM4SF4P48230 202 aa12.7□□□□□ -0.38
GPNMB-211ENST00000479625 RPS8P62241 208 aaKnown RBP12.7□□□□□ -0.38
GPNMB-211ENST00000479625 NBPF9Q3BBW0 867 aa12.7□□□□□ -0.38
GPNMB-211ENST00000479625 AGBL3Q8NEM8 1001 aa12.7□□□□□ -0.38
GPNMB-211ENST00000479625 OCEL1Q9H607 264 aa12.7□□□□□ -0.38
GPNMB-211ENST00000479625 PODXL2Q9NZ53 605 aa12.7□□□□□ -0.38
GPNMB-211ENST00000479625 A0A1B0GUL6 1792 aa12.7□□□□□ -0.38
GPNMB-211ENST00000479625 ZSWIM8A7E2V4 1837 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 USP17L8P0C7I0 530 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 PRKG1Q13976 671 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 NOM1Q5C9Z4 860 aaKnown RBP12.69□□□□□ -0.38
GPNMB-211ENST00000479625 PLBD2Q8NHP8 589 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 MXD3Q9BW11 206 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 ANKIB1Q9P2G1 1089 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 GGA1Q9UJY5 639 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 FZD1Q9UP38 647 aa12.69□□□□□ -0.38
GPNMB-211ENST00000479625 WTIPA6NIX2 430 aaPredicted RBP12.68□□□□□ -0.38
GPNMB-211ENST00000479625 SASH1O94885 1247 aa12.68□□□□□ -0.38
GPNMB-211ENST00000479625 RIPK4P57078 832 aa12.68□□□□□ -0.38
GPNMB-211ENST00000479625 CCDC85AQ96PX6 553 aaPredicted RBP12.68□□□□□ -0.38
GPNMB-211ENST00000479625 FXR1P51114 621 aaKnown RBP eCLIP12.67□□□□□ -0.38
GPNMB-211ENST00000479625 PTPN12Q05209 780 aaKnown RBP12.67□□□□□ -0.38
GPNMB-211ENST00000479625 SREBF2Q12772 1141 aa12.67□□□□□ -0.38
GPNMB-211ENST00000479625 HDGFL1Q5TGJ6 251 aa12.67□□□□□ -0.38
GPNMB-211ENST00000479625 ANKRD13DQ6ZTN6 518 aa12.67□□□□□ -0.38
GPNMB-211ENST00000479625 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.67□□□□□ -0.38
GPNMB-211ENST00000479625 TRIM17Q9Y577 477 aa12.67□□□□□ -0.38
GPNMB-211ENST00000479625 SSC5DA1L4H1 1573 aa12.67□□□□□ -0.38
GPNMB-211ENST00000479625 USP17L3A6NCW0 530 aa12.66□□□□□ -0.38
GPNMB-211ENST00000479625 USP17L4A6NCW7 530 aa12.66□□□□□ -0.38
GPNMB-211ENST00000479625 OTOP1Q7RTM1 612 aa12.66□□□□□ -0.38
GPNMB-211ENST00000479625 USP17L1Q7RTZ2 530 aa12.66□□□□□ -0.38
GPNMB-211ENST00000479625 JARID2Q92833 1246 aaPredicted RBP12.66□□□□□ -0.38
GPNMB-211ENST00000479625 CFHR5Q9BXR6 569 aa12.66□□□□□ -0.38
GPNMB-211ENST00000479625 XDHP47989 1333 aa12.65□□□□□ -0.38
GPNMB-211ENST00000479625 KIAA0100Q14667 2235 aaKnown RBP12.65□□□□□ -0.38
GPNMB-211ENST00000479625 WNT10BO00744 389 aa12.65□□□□□ -0.38
GPNMB-211ENST00000479625 TMPOP42166 694 aaKnown RBP12.65□□□□□ -0.38
GPNMB-211ENST00000479625 FBXW7Q969H0 707 aa12.65□□□□□ -0.38
GPNMB-211ENST00000479625 BABAM1Q9NWV8 329 aa12.65□□□□□ -0.38
GPNMB-211ENST00000479625 LAS1LQ9Y4W2 734 aaKnown RBP12.65□□□□□ -0.38
GPNMB-211ENST00000479625 NF2P35240 595 aa12.64□□□□□ -0.39
GPNMB-211ENST00000479625 DACT2Q5SW24 774 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms