RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TRIM22Q8IYM9 498 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 RHOVQ96L33 236 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 PNMA5Q96PV4 448 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 OSMRQ99650 979 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.82□□□□□ -1.165e-7■□□□□ 11.1
UPF3B-203ENST00000478840 SPON2Q9BUD6 331 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 BHLHE41Q9C0J9 482 aaPredicted RBP7.82□□□□□ -1.16
UPF3B-203ENST00000478840 DZANK1Q9NVP4 752 aa7.82□□□□□ -1.16
UPF3B-203ENST00000478840 EIF4A3P38919 411 aaKnown RBP7.81□□□□□ -1.16
UPF3B-203ENST00000478840 NRLP54845 237 aa7.81□□□□□ -1.16
UPF3B-203ENST00000478840 DBN1Q16643 649 aa7.81□□□□□ -1.16
UPF3B-203ENST00000478840 DTHD1Q6ZMT9 781 aa7.81□□□□□ -1.16
UPF3B-203ENST00000478840 RIPOR1Q6ZS17 1223 aa7.81□□□□□ -1.16
UPF3B-203ENST00000478840 NCAPG2Q86XI2 1143 aa7.81□□□□□ -1.16
UPF3B-203ENST00000478840 TMEM102Q8N9M5 508 aaPredicted RBP7.81□□□□□ -1.16
UPF3B-203ENST00000478840 CEP44Q9C0F1 390 aa7.81□□□□□ -1.16
UPF3B-203ENST00000478840 C11orf95C9JLR9 678 aaPredicted RBP7.8□□□□□ -1.16
UPF3B-203ENST00000478840 NFKBIEO00221 500 aa7.8□□□□□ -1.16
UPF3B-203ENST00000478840 STK10O94804 968 aaKnown RBP7.8□□□□□ -1.16
UPF3B-203ENST00000478840 GRIN2CQ14957 1233 aa7.8□□□□□ -1.16
UPF3B-203ENST00000478840 CCDC144BQ3MJ40 725 aa7.8□□□□□ -1.16
UPF3B-203ENST00000478840 RPS26P11Q5JNZ5 115 aaPredicted RBP7.8□□□□□ -1.16
UPF3B-203ENST00000478840 DHX32Q7L7V1 743 aaKnown RBP7.8□□□□□ -1.16
UPF3B-203ENST00000478840 ZNF775Q96BV0 537 aaPredicted RBP7.8□□□□□ -1.16
UPF3B-203ENST00000478840 SLC30A3Q99726 388 aa7.8□□□□□ -1.16
UPF3B-203ENST00000478840 TRIM56Q9BRZ2 755 aaKnown RBP7.8□□□□□ -1.16
UPF3B-203ENST00000478840 NT5C1AQ9BXI3 368 aa7.8□□□□□ -1.16
UPF3B-203ENST00000478840 ATXN7L1Q9ULK2 861 aaPredicted RBP7.8□□□□□ -1.16
UPF3B-203ENST00000478840 HSP90B1P14625 803 aaKnown RBP7.79□□□□□ -1.16
UPF3B-203ENST00000478840 GBP2P32456 591 aaPredicted RBP7.79□□□□□ -1.16
UPF3B-203ENST00000478840 GRIA4P48058 902 aa7.79□□□□□ -1.16
UPF3B-203ENST00000478840 COL9A2Q14055 689 aaPredicted RBP7.79□□□□□ -1.16
UPF3B-203ENST00000478840 PHC3Q8NDX5 983 aa7.79□□□□□ -1.16
UPF3B-203ENST00000478840 TRPM4Q8TD43 1214 aa7.79□□□□□ -1.16
UPF3B-203ENST00000478840 NXPE3Q969Y0 559 aa7.79□□□□□ -1.16
UPF3B-203ENST00000478840 AKAP2Q9Y2D5 859 aa7.79□□□□□ -1.16
UPF3B-203ENST00000478840 GREM1O60565 184 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 ACPPP15309 386 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 GARTP22102 1010 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 GPLD1P80108 840 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 NBPF6Q5VWK0 638 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 CCDC155Q8N6L0 562 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 ZNF296Q8WUU4 475 aaPredicted RBP7.78□□□□□ -1.16
UPF3B-203ENST00000478840 BHMTQ93088 406 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 ABHD17AQ96GS6 310 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 EAF1Q96JC9 268 aaPredicted RBP7.78□□□□□ -1.16
UPF3B-203ENST00000478840 NBPF4Q96M43 638 aa7.78□□□□□ -1.16
UPF3B-203ENST00000478840 SOBPA7XYQ1 873 aa7.77□□□□□ -1.17
UPF3B-203ENST00000478840 SOX9P48436 509 aa7.77□□□□□ -1.17
UPF3B-203ENST00000478840 LIG3P49916 1009 aa7.77□□□□□ -1.17
UPF3B-203ENST00000478840 RPS26P62854 115 aaKnown RBP7.77□□□□□ -1.17
UPF3B-203ENST00000478840 LMNB2Q03252 620 aa7.77□□□□□ -1.17
UPF3B-203ENST00000478840 ZNF837Q96EG3 531 aaPredicted RBP7.77□□□□□ -1.17
UPF3B-203ENST00000478840 NECAB3Q96P71 396 aaPredicted RBP7.77□□□□□ -1.17
UPF3B-203ENST00000478840 STRIP2Q9ULQ0 834 aa7.77□□□□□ -1.17
UPF3B-203ENST00000478840 A0A096LPE4 126 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 LOC102724428A0A0B4J2F2 783 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 A0A1W2PPZ6 126 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 MINDY4BA8MYZ0 360 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 ENC1O14682 589 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 FBXO24O75426 580 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 CD33P20138 364 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 SIK1P57059 783 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 NEUROD1Q13562 356 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 FBXL19Q6PCT2 694 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 TPTE2Q6XPS3 522 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 AGMOQ6ZNB7 445 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 SPACA7Q96KW9 195 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 OSBPL2Q9H1P3 480 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 ZNF576Q9H609 170 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 SEC31BQ9NQW1 1179 aa7.76□□□□□ -1.17
UPF3B-203ENST00000478840 SUPT16HQ9Y5B9 1047 aaKnown RBP7.76□□□□□ -1.17
UPF3B-203ENST00000478840 TLDC2A0PJX2 215 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 ZBTB42B2RXF5 422 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 CELA3AP09093 270 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 PCSK7Q16549 785 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 SPRED3Q2MJR0 410 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 PMFBP1Q8TBY8 1022 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 TRIM47Q96LD4 638 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 NSUN5Q96P11 429 aaKnown RBP7.75□□□□□ -1.17
UPF3B-203ENST00000478840 PBX4Q9BYU1 374 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 PHF24Q9UPV7 400 aa7.75□□□□□ -1.17
UPF3B-203ENST00000478840 TMA7Q9Y2S6 64 aaKnown RBP7.75□□□□□ -1.17
UPF3B-203ENST00000478840 ROBO2Q9HCK4 1378 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 METTL12A8MUP2 240 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 PDE2AO00408 941 aaPredicted RBP7.74□□□□□ -1.17
UPF3B-203ENST00000478840 PF4P02776 101 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 FGFR3P22607 806 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 ITGA6P23229 1130 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 NASPP49321 788 aaPredicted RBP7.74□□□□□ -1.17
UPF3B-203ENST00000478840 NFX1Q12986 1120 aaKnown RBP7.74□□□□□ -1.17
UPF3B-203ENST00000478840 CAMK2GQ13555 558 aaPredicted RBP7.74□□□□□ -1.17
UPF3B-203ENST00000478840 CCDC84Q86UT8 332 aaPredicted RBP7.74□□□□□ -1.17
UPF3B-203ENST00000478840 CKAP2LQ8IYA6 745 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 KIFC2Q96AC6 838 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 HHIPQ96QV1 700 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 PIF1Q9H611 641 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 SENP2Q9HC62 589 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 GINM1Q9NU53 330 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 TLR6Q9Y2C9 796 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms