RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 GALNT11Q8NCW6 608 aa8.95□□□□□ -0.98
VPS50-213ENST00000477572 SALL4Q9UJQ4 1053 aa8.95□□□□□ -0.98
VPS50-213ENST00000477572 EREGO14944 169 aa8.94□□□□□ -0.98
VPS50-213ENST00000477572 EPHA1P21709 976 aa8.94□□□□□ -0.98
VPS50-213ENST00000477572 ERICH6Q7L0X2 663 aa8.94□□□□□ -0.98
VPS50-213ENST00000477572 H3BRB1 525 aa8.93□□□□□ -0.98
VPS50-213ENST00000477572 PHACTR2O75167 634 aa8.93□□□□□ -0.98
VPS50-213ENST00000477572 TNFRSF21O75509 655 aa8.93□□□□□ -0.98
VPS50-213ENST00000477572 AGGF1Q8N302 714 aaeCLIP8.93□□□□□ -0.98
VPS50-213ENST00000477572 MEGF10Q96KG7 1140 aa8.93□□□□□ -0.98
VPS50-213ENST00000477572 TUT1Q9H6E5 874 aaKnown RBP8.93□□□□□ -0.98
VPS50-213ENST00000477572 ICMTO60725 284 aa8.92□□□□□ -0.98
VPS50-213ENST00000477572 PTPRAP18433 802 aa8.92□□□□□ -0.98
VPS50-213ENST00000477572 SSBP4Q9BWG4 385 aaPredicted RBP8.92□□□□□ -0.98
VPS50-213ENST00000477572 MUC3BQ9H195 1237 aa8.92□□□□□ -0.98
VPS50-213ENST00000477572 AKTIPQ9H8T0 292 aa8.92□□□□□ -0.98
VPS50-213ENST00000477572 DZANK1Q9NVP4 752 aa8.92□□□□□ -0.98
VPS50-213ENST00000477572 KCNK4Q9NYG8 393 aa8.92□□□□□ -0.98
VPS50-213ENST00000477572 DDX3YO15523 660 aaKnown RBP8.91□□□□□ -0.98
VPS50-213ENST00000477572 B4GALNT3Q6L9W6 998 aa8.91□□□□□ -0.98
VPS50-213ENST00000477572 GLYCTKQ8IVS8 523 aa8.91□□□□□ -0.98
VPS50-213ENST00000477572 MRPL18Q9H0U6 180 aaKnown RBP8.91□□□□□ -0.98
VPS50-213ENST00000477572 FAM177BA6PVY3 158 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 F8W735 103 aaPredicted RBP8.9□□□□□ -0.98
VPS50-213ENST00000477572 NFKBIEO00221 500 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 PDE2AO00408 941 aaPredicted RBP8.9□□□□□ -0.98
VPS50-213ENST00000477572 WISP1O95388 367 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 POLR3DP05423 398 aaPredicted RBP8.9□□□□□ -0.98
VPS50-213ENST00000477572 FOXD4L6Q3SYB3 417 aaPredicted RBP8.9□□□□□ -0.98
VPS50-213ENST00000477572 PRSS36Q5K4E3 855 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 FOXD4L3Q6VB84 417 aaPredicted RBP8.9□□□□□ -0.98
VPS50-213ENST00000477572 MAP4K3Q8IVH8 894 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 CACTIN-AS1Q8N1I8 211 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 OSMRQ99650 979 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 LATS2Q9NRM7 1088 aa8.9□□□□□ -0.98
VPS50-213ENST00000477572 FSCN2O14926 492 aa8.89□□□□□ -0.99
VPS50-213ENST00000477572 CD68P34810 354 aaPredicted RBP8.89□□□□□ -0.99
VPS50-213ENST00000477572 USP5P45974 858 aa8.89□□□□□ -0.99
VPS50-213ENST00000477572 FAM117BQ6P1L5 589 aa8.89□□□□□ -0.99
VPS50-213ENST00000477572 GJD3Q8N144 294 aa8.89□□□□□ -0.99
VPS50-213ENST00000477572 SNX29Q8TEQ0 813 aa8.89□□□□□ -0.99
VPS50-213ENST00000477572 ZKSCAN3Q9BRR0 538 aa8.89□□□□□ -0.99
VPS50-213ENST00000477572 GLB1P16278 677 aa8.88□□□□□ -0.99
VPS50-213ENST00000477572 ZMYM1Q5SVZ6 1142 aa8.88□□□□□ -0.99
VPS50-213ENST00000477572 SLC7A3Q8WY07 619 aa8.88□□□□□ -0.99
VPS50-213ENST00000477572 PMEPA1Q969W9 287 aa8.88□□□□□ -0.99
VPS50-213ENST00000477572 KLHDC7BQ96G42 594 aa8.88□□□□□ -0.99
VPS50-213ENST00000477572 ADAM19Q9H013 955 aa8.88□□□□□ -0.99
VPS50-213ENST00000477572 SRA1Q9HD15 236 aaKnown RBP8.88□□□□□ -0.99
VPS50-213ENST00000477572 BRPF3Q9ULD4 1205 aa8.88□□□□□ -0.99
VPS50-213ENST00000477572 H2AFB1P0C5Y9 115 aa8.87□□□□□ -0.99
VPS50-213ENST00000477572 H2AFB2P0C5Z0 115 aa8.87□□□□□ -0.99
VPS50-213ENST00000477572 EHHADHQ08426 723 aa8.87□□□□□ -0.99
VPS50-213ENST00000477572 ECM1Q16610 540 aa8.87□□□□□ -0.99
VPS50-213ENST00000477572 HGSNATQ68CP4 663 aa8.87□□□□□ -0.99
VPS50-213ENST00000477572 ACAD11Q709F0 780 aa8.87□□□□□ -0.99
VPS50-213ENST00000477572 EGFL7Q9UHF1 273 aa8.87□□□□□ -0.99
VPS50-213ENST00000477572 TM4SF5O14894 197 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 CABP4P57796 275 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 TMEM130Q8N3G9 435 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 Q8N3U1 123 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 ASAP3Q8TDY4 903 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 UBASH3BQ8TF42 649 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 NXPE3Q969Y0 559 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 SEC31BQ9NQW1 1179 aa8.86□□□□□ -0.99
VPS50-213ENST00000477572 H3BRJ5 948 aa8.85□□□□□ -0.99
VPS50-213ENST00000477572 ADAM11O75078 769 aa8.85□□□□□ -0.99
VPS50-213ENST00000477572 EDN3P14138 238 aa8.85□□□□□ -0.99
VPS50-213ENST00000477572 NLRP12P59046 1061 aa8.85□□□□□ -0.99
VPS50-213ENST00000477572 ARHGAP4P98171 946 aa8.85□□□□□ -0.99
VPS50-213ENST00000477572 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.85□□□□□ -0.99
VPS50-213ENST00000477572 FOXD4L4Q8WXT5 416 aaPredicted RBP8.85□□□□□ -0.99
VPS50-213ENST00000477572 ZFYVE28Q9HCC9 887 aa8.85□□□□□ -0.99
VPS50-213ENST00000477572 AMOTL2Q9Y2J4 779 aa8.85□□□□□ -0.99
VPS50-213ENST00000477572 METTL12A8MUP2 240 aa8.84□□□□□ -0.99
VPS50-213ENST00000477572 DUOXA2Q1HG44 320 aa8.84□□□□□ -0.99
VPS50-213ENST00000477572 PEAR1Q5VY43 1037 aaPredicted RBP8.84□□□□□ -0.99
VPS50-213ENST00000477572 USPL1Q5W0Q7 1092 aa8.84□□□□□ -0.99
VPS50-213ENST00000477572 TXNDC2Q86VQ3 553 aa8.84□□□□□ -0.99
VPS50-213ENST00000477572 TMEM102Q8N9M5 508 aaPredicted RBP8.84□□□□□ -0.99
VPS50-213ENST00000477572 DCAF11Q8TEB1 546 aa8.84□□□□□ -0.99
VPS50-213ENST00000477572 XP32Q5T750 250 aa8.83□□□□□ -1
VPS50-213ENST00000477572 KIAA1211Q6ZU35 1233 aa8.83□□□□□ -1
VPS50-213ENST00000477572 DZIP1LQ8IYY4 767 aaKnown RBP8.83□□□□□ -1
VPS50-213ENST00000477572 KLHL23Q8NBE8 558 aa8.83□□□□□ -1
VPS50-213ENST00000477572 UBL7Q96S82 380 aaPredicted RBP8.83□□□□□ -1
VPS50-213ENST00000477572 SOX13Q9UN79 622 aa8.83□□□□□ -1
VPS50-213ENST00000477572 SCO2A0A1W2PP80 73 aa8.82□□□□□ -1
VPS50-213ENST00000477572 VN1R5Q7Z5H4 357 aa8.82□□□□□ -1
VPS50-213ENST00000477572 NDUFB5O43674 189 aa8.81□□□□□ -1
VPS50-213ENST00000477572 PIP4K2BP78356 416 aa8.81□□□□□ -1
VPS50-213ENST00000477572 ORC1Q13415 861 aa8.81□□□□□ -1
VPS50-213ENST00000477572 PRR23CQ6ZRP0 262 aa8.81□□□□□ -1
VPS50-213ENST00000477572 TMC1Q8TDI8 760 aa8.81□□□□□ -1
VPS50-213ENST00000477572 BSNDQ8WZ55 320 aa8.81□□□□□ -1
VPS50-213ENST00000477572 SOX1O00570 391 aaPredicted RBP8.8□□□□□ -1
VPS50-213ENST00000477572 IKBKEQ14164 716 aa8.8□□□□□ -1
VPS50-213ENST00000477572 Q6ZS46 218 aa8.8□□□□□ -1
VPS50-213ENST00000477572 C19orf57Q0VDD7 668 aa8.79□□□□□ -1
VPS50-213ENST00000477572 CCER1Q8TC90 406 aaPredicted RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms