RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 G3V3G9 751 aa12.09□□□□□ -0.47
HDAC3-208ENST00000476739 GMPSP49915 693 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-208ENST00000476739 C1QTNF8P60827 252 aa12.09□□□□□ -0.47
HDAC3-208ENST00000476739 ATP8B2P98198 1209 aa12.09□□□□□ -0.47
HDAC3-208ENST00000476739 DCAF8Q5TAQ9 597 aa12.09□□□□□ -0.47
HDAC3-208ENST00000476739 C15orf52Q6ZUT6 534 aaKnown RBP12.09□□□□□ -0.47
HDAC3-208ENST00000476739 MXD3Q9BW11 206 aa12.09□□□□□ -0.47
HDAC3-208ENST00000476739 HACL1Q9UJ83 578 aa12.09□□□□□ -0.47
HDAC3-208ENST00000476739 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-208ENST00000476739 PSME4Q14997 1843 aa12.09□□□□□ -0.47
HDAC3-208ENST00000476739 TOMM70O94826 608 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 PDE8BO95263 885 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 MS4A1P11836 297 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 EPHX2P34913 555 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 GYG1P46976 350 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 UBE4AQ14139 1066 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 TNIP1Q15025 636 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 PODNQ7Z5L7 613 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 COA1Q9GZY4 146 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 CD209Q9NNX6 404 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 GPRC5DQ9NZD1 345 aa12.08□□□□□ -0.48
HDAC3-208ENST00000476739 IQCA1LA6NCM1 817 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 CIAO1O76071 339 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 VIL1P09327 827 aaKnown RBP12.07□□□□□ -0.48
HDAC3-208ENST00000476739 FGFR2P21802 821 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 RRP1P56182 461 aaKnown RBP12.07□□□□□ -0.48
HDAC3-208ENST00000476739 POLA2Q14181 598 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 PDE3AQ14432 1141 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 CEP85Q6P2H3 762 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 C16orf71Q8IYS4 520 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-208ENST00000476739 FAM84BQ96KN1 310 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-208ENST00000476739 ZBTB40Q9NUA8 1239 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 DDX19BQ9UMR2 479 aa12.07□□□□□ -0.48
HDAC3-208ENST00000476739 ADAMTSL1Q8N6G6 1762 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 USP17L3A6NCW0 530 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 USP17L4A6NCW7 530 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 EGFRP00533 1210 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 LMOD1P29536 600 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-208ENST00000476739 IL15P40933 162 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-208ENST00000476739 EAPPQ56P03 285 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-208ENST00000476739 DACT2Q5SW24 774 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 USP17L1Q7RTZ2 530 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 MICALL2Q8IY33 904 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-208ENST00000476739 RBM46Q8TBY0 533 aaKnown RBP12.06□□□□□ -0.48
HDAC3-208ENST00000476739 SSH3Q8TE77 659 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 FBXW7Q969H0 707 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 CNOT7Q9UIV1 285 aaKnown RBP12.06□□□□□ -0.48
HDAC3-208ENST00000476739 FBXO3Q9UK99 471 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 JAG2Q9Y219 1238 aa12.06□□□□□ -0.48
HDAC3-208ENST00000476739 IL1R1P14778 569 aa12.05□□□□□ -0.48
HDAC3-208ENST00000476739 BCAMP50895 628 aa12.05□□□□□ -0.48
HDAC3-208ENST00000476739 HIRAP54198 1017 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-208ENST00000476739 GTF2IP78347 998 aa12.05□□□□□ -0.48
HDAC3-208ENST00000476739 TFCP2Q12800 502 aa12.05□□□□□ -0.48
HDAC3-208ENST00000476739 PUM3Q15397 648 aaKnown RBP12.05□□□□□ -0.48
HDAC3-208ENST00000476739 RSBN1LQ6PCB5 846 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-208ENST00000476739 ZNF804AQ7Z570 1209 aa12.05□□□□□ -0.48
HDAC3-208ENST00000476739 TRPM4Q8TD43 1214 aa12.05□□□□□ -0.48
HDAC3-208ENST00000476739 GMLQ99445 158 aa12.05□□□□□ -0.48
HDAC3-208ENST00000476739 IQSEC3Q9UPP2 1182 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-208ENST00000476739 SASH1O94885 1247 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 HIBADHP31937 336 aaKnown RBP12.04□□□□□ -0.48
HDAC3-208ENST00000476739 STRIP1Q5VSL9 837 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 TTLL5Q6EMB2 1281 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 SAMD7Q7Z3H4 446 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 FBXO33Q7Z6M2 555 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 SIRT2Q8IXJ6 389 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 CERS5Q8N5B7 392 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 TDRD7Q8NHU6 1098 aaKnown RBP12.04□□□□□ -0.48
HDAC3-208ENST00000476739 DPF2Q92785 391 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 CEP126Q9P2H0 1117 aa12.04□□□□□ -0.48
HDAC3-208ENST00000476739 RPS12P25398 132 aaKnown RBP12.03□□□□□ -0.48
HDAC3-208ENST00000476739 ADORA1P30542 326 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 TIMM10P62072 90 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 ATP2B3Q16720 1220 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 LDHDQ86WU2 507 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 SMC1BQ8NDV3 1235 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 AGBL3Q8NEM8 1001 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 LPIN2Q92539 896 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 ADARB2Q9NS39 739 aaKnown RBP12.03□□□□□ -0.48
HDAC3-208ENST00000476739 ZNF609O15014 1411 aa12.03□□□□□ -0.48
HDAC3-208ENST00000476739 H7C1D1 291 aa12.02□□□□□ -0.49
HDAC3-208ENST00000476739 SURF6O75683 361 aaKnown RBP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 IFIT1P09914 478 aaKnown RBP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 SLC5A1P13866 664 aa12.02□□□□□ -0.49
HDAC3-208ENST00000476739 G3BP1Q13283 466 aaKnown RBP eCLIP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 TBC1D10BQ4KMP7 808 aaPredicted RBP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 RBM26Q5T8P6 1007 aaKnown RBP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 MAP1SQ66K74 1059 aaPredicted RBP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 CHADLQ6NUI6 762 aa12.02□□□□□ -0.49
HDAC3-208ENST00000476739 USP50Q70EL3 339 aaPredicted RBP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 PNMA8AQ86V59 439 aaPredicted RBP12.02□□□□□ -0.49
HDAC3-208ENST00000476739 CLEC11AQ9Y240 323 aa12.02□□□□□ -0.49
HDAC3-208ENST00000476739 ARAP2Q8WZ64 1704 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 A0A1B0GUL7 405 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 USP17L8P0C7I0 530 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 ZNF280AP59817 542 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-208ENST00000476739 FSTL1Q12841 308 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 GRIK5Q16478 980 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms