RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.76□□□□□ -1.01
LIMD1-204ENST00000474665 KLHDC4Q8TBB5 520 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 HHIPL1Q96JK4 782 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 CRBNQ96SW2 442 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 PUS3Q9BZE2 481 aaKnown RBP8.76□□□□□ -1.01
LIMD1-204ENST00000474665 ZNF408Q9H9D4 720 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 ATP6V0A2Q9Y487 856 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 GJA3Q9Y6H8 435 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 DUOX1Q9NRD9 1551 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 TRPM7Q96QT4 1865 aa8.75□□□□□ -1.01
LIMD1-204ENST00000474665 FZD9O00144 591 aa8.75□□□□□ -1.01
LIMD1-204ENST00000474665 PPEF1O14829 653 aaPredicted RBP8.75□□□□□ -1.01
LIMD1-204ENST00000474665 PTPN12Q05209 780 aaKnown RBP8.75□□□□□ -1.01
LIMD1-204ENST00000474665 POLA2Q14181 598 aa8.75□□□□□ -1.01
LIMD1-204ENST00000474665 SP8Q8IXZ3 490 aa8.75□□□□□ -1.01
LIMD1-204ENST00000474665 GPC2Q8N158 579 aa8.75□□□□□ -1.01
LIMD1-204ENST00000474665 SAGE1Q9NXZ1 904 aa8.75□□□□□ -1.01
LIMD1-204ENST00000474665 DDX19BQ9UMR2 479 aa8.75□□□□□ -1.01
LIMD1-204ENST00000474665 IRX6P78412 446 aaPredicted RBP8.74□□□□□ -1.01
LIMD1-204ENST00000474665 ATP8B2P98198 1209 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 KIF23Q02241 960 aaPredicted RBP8.74□□□□□ -1.01
LIMD1-204ENST00000474665 IFIT5Q13325 482 aaKnown RBP8.74□□□□□ -1.01
LIMD1-204ENST00000474665 CEP85Q6P2H3 762 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 ATG9AQ7Z3C6 839 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 EXOC6Q8TAG9 804 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 SSH3Q8TE77 659 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 GLIS2Q9BZE0 524 aaPredicted RBP8.74□□□□□ -1.01
LIMD1-204ENST00000474665 BSDC1Q9NW68 430 aaPredicted RBP8.74□□□□□ -1.01
LIMD1-204ENST00000474665 MINPP1Q9UNW1 487 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 PA2G4Q9UQ80 394 aaKnown RBP8.74□□□□□ -1.01
LIMD1-204ENST00000474665 CHMP3Q9Y3E7 222 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 RIPOR2Q9Y4F9 1068 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 PCDHB15Q9Y5E8 787 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.74□□□□□ -1.01
LIMD1-204ENST00000474665 COL4A5P29400 1685 aa8.74□□□□□ -1.01
LIMD1-204ENST00000474665 ANKRD18BA2A2Z9 1011 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 SNAP23O00161 211 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 SRGAP3O43295 1099 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 LMOD1P29536 600 aaPredicted RBP8.73□□□□□ -1.01
LIMD1-204ENST00000474665 GPSM2P81274 684 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 FKBP4Q02790 459 aaKnown RBP eCLIP8.73□□□□□ -1.01
LIMD1-204ENST00000474665 LRRC24Q50LG9 513 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 SOGA3Q5TF21 947 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 ANKRD18AQ8IVF6 992 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 CDC5LQ99459 802 aaKnown RBP8.73□□□□□ -1.01
LIMD1-204ENST00000474665 RTFDC1Q9BY42 306 aaPredicted RBP8.73□□□□□ -1.01
LIMD1-204ENST00000474665 COPRSQ9NQ92 184 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 POLLQ9UGP5 575 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 SCN9AQ15858 1988 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 CUL9Q8IWT3 2517 aa8.73□□□□□ -1.01
LIMD1-204ENST00000474665 POTEFA5A3E0 1075 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 FAM155AB1AL88 458 aaPredicted RBP8.72□□□□□ -1.01
LIMD1-204ENST00000474665 MNX1P50219 401 aaPredicted RBP8.72□□□□□ -1.01
LIMD1-204ENST00000474665 SCNN1DP51172 638 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 CHRNDQ07001 517 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 PKN2Q16513 984 aaKnown RBP8.72□□□□□ -1.01
LIMD1-204ENST00000474665 CCDC57Q2TAC2 916 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 CCDC93Q567U6 631 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 USP50Q70EL3 339 aaPredicted RBP8.72□□□□□ -1.01
LIMD1-204ENST00000474665 TMC4Q7Z404 712 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 VGLL2Q8N8G2 317 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 HELBQ8NG08 1087 aaPredicted RBP8.72□□□□□ -1.01
LIMD1-204ENST00000474665 PODXL2Q9NZ53 605 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 HDAC9Q9UKV0 1011 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 IRS2Q9Y4H2 1338 aa8.72□□□□□ -1.01
LIMD1-204ENST00000474665 SZT2Q5T011 3432 aa8.71□□□□□ -1.01
LIMD1-204ENST00000474665 EYA2O00167 538 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 TAF5LO75529 589 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 KLRK1P26718 216 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 IGHMBP2P38935 993 aaKnown RBP8.71□□□□□ -1.02
LIMD1-204ENST00000474665 IARSP41252 1262 aaKnown RBP8.71□□□□□ -1.02
LIMD1-204ENST00000474665 HUNKP57058 714 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 CC2D2BQ6DHV5 1058 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 DLK2Q6UY11 383 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 LDHAL6AQ6ZMR3 332 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 TXNRD3Q86VQ6 643 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 RTKN2Q8IZC4 609 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 TBC1D16Q8TBP0 767 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 PSMD1Q99460 953 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 SIL1Q9H173 461 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 NSFL1CQ9UNZ2 370 aaKnown RBP8.71□□□□□ -1.02
LIMD1-204ENST00000474665 HDAC5Q9UQL6 1122 aa8.71□□□□□ -1.02
LIMD1-204ENST00000474665 RPAP2Q8IXW5 612 aaPredicted RBP8.7□□□□□ -1.02
LIMD1-204ENST00000474665 MPNDQ8N594 471 aa8.7□□□□□ -1.02
LIMD1-204ENST00000474665 CSRNP1Q96S65 589 aa8.7□□□□□ -1.02
LIMD1-204ENST00000474665 MPHOSPH8Q99549 860 aa8.7□□□□□ -1.02
LIMD1-204ENST00000474665 NOP58Q9Y2X3 529 aaKnown RBP8.7□□□□□ -1.02
LIMD1-204ENST00000474665 A0A0C4DFX4 3053 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 CIAO1O76071 339 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 SASH1O94885 1247 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 FGFR2P21802 821 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 EIF6P56537 245 aaKnown RBP8.69□□□□□ -1.02
LIMD1-204ENST00000474665 RGMBQ6NW40 437 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 DPP8Q6V1X1 898 aaPredicted RBP8.69□□□□□ -1.02
LIMD1-204ENST00000474665 ZNF296Q8WUU4 475 aaPredicted RBP8.69□□□□□ -1.02
LIMD1-204ENST00000474665 JDP2Q8WYK2 163 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 OTUD5Q96G74 571 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 CNNM1Q9NRU3 951 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 ANKIB1Q9P2G1 1089 aa8.69□□□□□ -1.02
LIMD1-204ENST00000474665 XDHP47989 1333 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms