RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	KRT72	Q14CN4	511 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	PTPN14	Q15678	1187 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	AP1AR	Q63HQ0	302 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	ZNF771	Q7L3S4	317 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	CCDC91	Q7Z6B0	441 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	RPAP2	Q8IXW5	612 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	ANKRD49	Q8WVL7	239 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	TBC1D5	Q92609	795 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	PLEKHA5	Q9HAU0	1116 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	GDPD2	Q9HCC8	539 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	ZNF304	Q9HCX3	659 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SQOR	Q9Y6N5	450 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	STK25	O00506	426 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	MTRF1	O75570	445 aa	Known RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	CSPG5	O95196	566 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	HSP90AB1	P08238	724 aa	Known RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	ATP2B1	P20020	1258 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	MLLT3	P42568	568 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	COPA	P53621	1224 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SFSWAP	Q12872	951 aa	Known RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SMUG1	Q53HV7	270 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	C10orf76	Q5T2E6	689 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SLC7A5P1	Q8MH63	180 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	TEX19	Q8NA77	164 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	STON2	Q8WXE9	905 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	CDK5RAP3	Q96JB5	506 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	IRX2	Q9BZI1	471 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SH3GLB2	Q9NR46	395 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	DIAPH3	Q9NSV4	1193 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	PRKAB1	Q9Y478	270 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	RNF123	Q5XPI4	1314 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	RASA4B	C9J798	803 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	PER1	O15534	1290 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	FIBP	O43427	364 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	DNAJC6	O75061	913 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	E2F6	O75461	281 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	ATP6V1A	P38606	617 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SLMAP	Q14BN4	828 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SPDYC	Q5MJ68	293 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	TSHZ3	Q63HK5	1081 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	NAIF1	Q69YI7	327 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	EFCAB13	Q8IY85	973 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SLC16A10	Q8TF71	515 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	HDAC7	Q8WUI4	952 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	N4BP2L2	Q92802	583 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	RMDN2	Q96LZ7	410 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	GBP4	Q96PP9	640 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	FAM126A	Q9BYI3	521 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	4.07	□□□□□ -1.76	1e-7	■■■■■ 35.4
UBR3-208	ENST00000474426	DEF6	Q9H4E7	631 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	KCTD5	Q9NXV2	234 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	LUZP4	Q9P127	313 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	PIP5K1C	O60331	668 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	KCNA6	P17658	529 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	CTH	P32929	405 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	FKBP15	Q5T1M5	1219 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	CLIP3	Q96DZ5	547 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	EXOC1	Q9NV70	894 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	TRPC6	Q9Y210	931 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	ATP8A1	Q9Y2Q0	1164 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	ZBED9	Q6R2W3	1325 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	SLFN14	P0C7P3	912 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	GZMA	P12544	262 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	NDUFV2	P19404	249 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	SEC13	P55735	322 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	SH3BGR	P55822	239 aa	Predicted RBP	4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	RWDD2B	P57060	319 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	WTAP	Q15007	396 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	PCMTD1	Q96MG8	357 aa	Predicted RBP	4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	OSBPL2	Q9H1P3	480 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	PRRT4	C9JH25	899 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	RASA4	O43374	803 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	MYL3	P08590	195 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	CHML	P26374	656 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	NLRP12	P59046	1061 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	E2F4	Q16254	413 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	CFAP58	Q5T655	872 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	NKAIN3	Q8N8D7	197 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	MRGBP	Q9NV56	204 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	CPSF2	Q9P2I0	782 aa	Known RBP	4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	ZNF69	Q9UC07	566 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	CCDC61	Q9Y6R9	512 aa		4.06	□□□□□ -1.76
UBR3-208	ENST00000474426	RASA1	P20936	1047 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	MAGEA10	P43363	369 aa	Predicted RBP	4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	RASA2	Q15283	850 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	PDCD2	Q16342	344 aa	Predicted RBP	4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	TCHP	Q9BT92	498 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	PSD3	Q9NYI0	1048 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	UBAP1	Q9NZ09	502 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	PCSK1N	Q9UHG2	260 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	SMTNL1	A8MU46	457 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	RHOBTB3	O94955	611 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	MYL1	P05976	194 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	MRE11	P49959	708 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	GABPB1	Q06547	395 aa	Predicted RBP	4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	TBC1D8B	Q0IIM8	1120 aa		4.05	□□□□□ -1.76
UBR3-208	ENST00000474426	GALNT17	Q6IS24	598 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms