RNA–Protein interactions for RNA: ENST00000473602.1

SHROOM3-204, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 789 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-204ENST00000473602 CDC5LQ99459 802 aaKnown RBP16.44■□□□□ 0.22
SHROOM3-204ENST00000473602 SPEF2Q9C093 1822 aa16.44■□□□□ 0.22
SHROOM3-204ENST00000473602 PTPRCP08575 1304 aa16.44■□□□□ 0.22
SHROOM3-204ENST00000473602 PDE4DIPQ5VU43 2346 aa16.44■□□□□ 0.22
SHROOM3-204ENST00000473602 ECE2O60344 883 aa16.43■□□□□ 0.22
SHROOM3-204ENST00000473602 MRPL50Q8N5N7 158 aaKnown RBP16.43■□□□□ 0.22
SHROOM3-204ENST00000473602 TTLL11Q8NHH1 800 aa16.43■□□□□ 0.22
SHROOM3-204ENST00000473602 CSRNP1Q96S65 589 aa16.43■□□□□ 0.22
SHROOM3-204ENST00000473602 SEC31BQ9NQW1 1179 aa16.43■□□□□ 0.22
SHROOM3-204ENST00000473602 ALDH1L1O75891 902 aa16.42■□□□□ 0.22
SHROOM3-204ENST00000473602 CASP7P55210 303 aa16.42■□□□□ 0.22
SHROOM3-204ENST00000473602 ANKRD18AQ8IVF6 992 aa16.42■□□□□ 0.22
SHROOM3-204ENST00000473602 SULF1Q8IWU6 871 aa16.42■□□□□ 0.22
SHROOM3-204ENST00000473602 EYA3Q99504 573 aa16.42■□□□□ 0.22
SHROOM3-204ENST00000473602 SLC10A3P09131 477 aa16.41■□□□□ 0.22
SHROOM3-204ENST00000473602 KIF4BQ2VIQ3 1234 aa16.41■□□□□ 0.22
SHROOM3-204ENST00000473602 TBC1D16Q8TBP0 767 aa16.41■□□□□ 0.22
SHROOM3-204ENST00000473602 SSH1Q8WYL5 1049 aa16.41■□□□□ 0.22
SHROOM3-204ENST00000473602 GGA3Q9NZ52 723 aa16.41■□□□□ 0.22
SHROOM3-204ENST00000473602 PODXL2Q9NZ53 605 aa16.41■□□□□ 0.22
SHROOM3-204ENST00000473602 ASTN2O75129 1339 aaPredicted RBP16.41■□□□□ 0.22
SHROOM3-204ENST00000473602 GRM8O00222 908 aa16.4■□□□□ 0.22
SHROOM3-204ENST00000473602 VIL1P09327 827 aaKnown RBP16.4■□□□□ 0.22
SHROOM3-204ENST00000473602 CCDC85AQ96PX6 553 aaPredicted RBP16.4■□□□□ 0.22
SHROOM3-204ENST00000473602 ZC3H12CQ9C0D7 883 aaKnown RBP16.4■□□□□ 0.22
SHROOM3-204ENST00000473602 SRCIN1Q9C0H9 1055 aa16.4■□□□□ 0.22
SHROOM3-204ENST00000473602 GREM2Q9H772 168 aa16.4■□□□□ 0.22
SHROOM3-204ENST00000473602 CSF1RP07333 972 aa16.39■□□□□ 0.21
SHROOM3-204ENST00000473602 SLC4A10Q6U841 1118 aa16.39■□□□□ 0.21
SHROOM3-204ENST00000473602 CTU1Q7Z7A3 348 aaKnown RBP16.39■□□□□ 0.21
SHROOM3-204ENST00000473602 CDCA5Q96FF9 252 aa16.39■□□□□ 0.21
SHROOM3-204ENST00000473602 SMC4Q9NTJ3 1288 aa16.38■□□□□ 0.21
SHROOM3-204ENST00000473602 BSDC1Q9NW68 430 aaPredicted RBP16.38■□□□□ 0.21
SHROOM3-204ENST00000473602 C9orf78Q9NZ63 289 aaPredicted RBP16.38■□□□□ 0.21
SHROOM3-204ENST00000473602 XDHP47989 1333 aa16.38■□□□□ 0.21
SHROOM3-204ENST00000473602 G3V3G9 751 aa16.37■□□□□ 0.21
SHROOM3-204ENST00000473602 IGHMBP2P38935 993 aaKnown RBP16.37■□□□□ 0.21
SHROOM3-204ENST00000473602 SCARF1Q14162 830 aa16.37■□□□□ 0.21
SHROOM3-204ENST00000473602 DCAF8Q5TAQ9 597 aa16.37■□□□□ 0.21
SHROOM3-204ENST00000473602 ANGEL2Q5VTE6 544 aaKnown RBP16.37■□□□□ 0.21
SHROOM3-204ENST00000473602 ANKIB1Q9P2G1 1089 aa16.37■□□□□ 0.21
SHROOM3-204ENST00000473602 ITGA6P23229 1130 aa16.36■□□□□ 0.21
SHROOM3-204ENST00000473602 ZNF280AP59817 542 aaPredicted RBP16.36■□□□□ 0.21
SHROOM3-204ENST00000473602 HNRNPUQ00839 825 aaKnown RBP eCLIP16.36■□□□□ 0.21
SHROOM3-204ENST00000473602 RASAL3Q86YV0 1011 aa16.36■□□□□ 0.21
SHROOM3-204ENST00000473602 REM2Q8IYK8 340 aaPredicted RBP16.36■□□□□ 0.21
SHROOM3-204ENST00000473602 GGA1Q9UJY5 639 aa16.36■□□□□ 0.21
SHROOM3-204ENST00000473602 UTYO14607 1347 aa16.36■□□□□ 0.21
SHROOM3-204ENST00000473602 PSME4Q14997 1843 aa16.35■□□□□ 0.21
SHROOM3-204ENST00000473602 UFL1O94874 794 aa16.35■□□□□ 0.21
SHROOM3-204ENST00000473602 FOXO4P98177 505 aa16.35■□□□□ 0.21
SHROOM3-204ENST00000473602 HPS5Q9UPZ3 1129 aa16.35■□□□□ 0.21
SHROOM3-204ENST00000473602 A0A1B0GUL6 1792 aa16.35■□□□□ 0.21
SHROOM3-204ENST00000473602 POLR2AP24928 1970 aaKnown RBP16.35■□□□□ 0.21
SHROOM3-204ENST00000473602 ANKRD18BA2A2Z9 1011 aa16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 ATP2B4P23634 1241 aa16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 IFIT5Q13325 482 aaKnown RBP16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 MAPK8IP2Q13387 824 aaPredicted RBP16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 PRPF38BQ5VTL8 546 aaKnown RBP16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 RSBN1LQ6PCB5 846 aaPredicted RBP16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 MOB2Q70IA6 237 aa16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 AGBL3Q8NEM8 1001 aa16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 MPHOSPH8Q99549 860 aa16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 SCAF8Q9UPN6 1271 aaKnown RBP16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 KIF16BQ96L93 1317 aa16.34■□□□□ 0.21
SHROOM3-204ENST00000473602 FKBP1BP68106 108 aa16.33■□□□□ 0.2
SHROOM3-204ENST00000473602 MINPP1Q9UNW1 487 aa16.33■□□□□ 0.2
SHROOM3-204ENST00000473602 UBE2Q2LH0YL09 131 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 TBC1D8O95759 1140 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 USP17L8P0C7I0 530 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 RARSP54136 660 aaKnown RBP16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 SCN9AQ15858 1988 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 LMBR1LQ6UX01 489 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 GMLQ99445 158 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 API5Q9BZZ5 524 aaKnown RBP16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 ANKRD2Q9GZV1 360 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 MYOZ2Q9NPC6 264 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 HDAC9Q9UKV0 1011 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 MED23Q9ULK4 1368 aa16.32■□□□□ 0.2
SHROOM3-204ENST00000473602 ZBED9Q6R2W3 1325 aa16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 NBPF7P0C2Y1 421 aaPredicted RBP16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 CCT4P50991 539 aaKnown RBP16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 PKN2Q16513 984 aaKnown RBP16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 CCDC57Q2TAC2 916 aa16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 EPHA10Q5JZY3 1008 aa16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 PRAMEF18Q5VWM3 479 aa16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 ZNF296Q8WUU4 475 aaPredicted RBP16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 ARHGAP45Q92619 1136 aa16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 LEMD3Q9Y2U8 911 aa16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 CHMP3Q9Y3E7 222 aa16.31■□□□□ 0.2
SHROOM3-204ENST00000473602 SUCLG2Q96I99 432 aa16.3■□□□□ 0.2
SHROOM3-204ENST00000473602 NOB1Q9ULX3 412 aaKnown RBP16.3■□□□□ 0.2
SHROOM3-204ENST00000473602 ZNF609O15014 1411 aa16.29■□□□□ 0.2
SHROOM3-204ENST00000473602 PITPNM2Q9BZ72 1349 aa16.29■□□□□ 0.2
SHROOM3-204ENST00000473602 USP17L3A6NCW0 530 aa16.29■□□□□ 0.2
SHROOM3-204ENST00000473602 USP17L4A6NCW7 530 aa16.29■□□□□ 0.2
SHROOM3-204ENST00000473602 RABL6Q3YEC7 729 aaPredicted RBP16.29■□□□□ 0.2
SHROOM3-204ENST00000473602 USP17L1Q7RTZ2 530 aa16.29■□□□□ 0.2
SHROOM3-204ENST00000473602 USP44Q9H0E7 712 aa16.29■□□□□ 0.2
SHROOM3-204ENST00000473602 CHRNDQ07001 517 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms