RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 C8orf34Q49A92 452 aa6.39□□□□□ -1.39
SCN1A-205ENST00000473295 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.39□□□□□ -1.39
SCN1A-205ENST00000473295 ADAM19Q9H013 955 aa6.39□□□□□ -1.39
SCN1A-205ENST00000473295 H3BRJ5 948 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 FSCN2O14926 492 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 GSC2O15499 205 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 GLB1P16278 677 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 AAMPQ13685 434 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 UVSSAQ2YD98 709 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 FOXD4L6Q3SYB3 417 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-205ENST00000473295 FOXD4L3Q6VB84 417 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-205ENST00000473295 C14orf37Q86TY3 774 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 KANSL3Q9P2N6 904 aa6.38□□□□□ -1.39
SCN1A-205ENST00000473295 ALX3O95076 343 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 PIP4K2BP78356 416 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 NBPF11Q86T75 865 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 C1orf127Q8N9H9 656 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 GALNT11Q8NCW6 608 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 SNX29Q8TEQ0 813 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 GGNBP2Q9H3C7 697 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 OSGEPQ9NPF4 335 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 SEC31BQ9NQW1 1179 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 CNTN3Q9P232 1028 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 RNF112Q9ULX5 631 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 USTQ9Y2C2 406 aa6.37□□□□□ -1.39
SCN1A-205ENST00000473295 EPHA1P21709 976 aa6.36□□□□□ -1.39
SCN1A-205ENST00000473295 ARL4DP49703 201 aa6.36□□□□□ -1.39
SCN1A-205ENST00000473295 FKBP4Q02790 459 aaKnown RBP eCLIP6.36□□□□□ -1.39
SCN1A-205ENST00000473295 DUOXA2Q1HG44 320 aa6.36□□□□□ -1.39
SCN1A-205ENST00000473295 ACAD11Q709F0 780 aa6.36□□□□□ -1.39
SCN1A-205ENST00000473295 ERICH6Q7L0X2 663 aa6.36□□□□□ -1.39
SCN1A-205ENST00000473295 POP1Q99575 1024 aaKnown RBP6.36□□□□□ -1.39
SCN1A-205ENST00000473295 DZANK1Q9NVP4 752 aa6.36□□□□□ -1.39
SCN1A-205ENST00000473295 POLIQ9UNA4 740 aa6.36□□□□□ -1.39
SCN1A-205ENST00000473295 PDE2AO00408 941 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-205ENST00000473295 EIF4EBP3O60516 100 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-205ENST00000473295 PHACTR2O75167 634 aa6.35□□□□□ -1.39
SCN1A-205ENST00000473295 EDN3P14138 238 aa6.35□□□□□ -1.39
SCN1A-205ENST00000473295 TXNDC11Q6PKC3 985 aa6.35□□□□□ -1.39
SCN1A-205ENST00000473295 AGGF1Q8N302 714 aaeCLIP6.35□□□□□ -1.39
SCN1A-205ENST00000473295 TMEM102Q8N9M5 508 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-205ENST00000473295 RAXQ9Y2V3 346 aa6.35□□□□□ -1.39
SCN1A-205ENST00000473295 DHX15O43143 795 aaKnown RBP6.34□□□□□ -1.39
SCN1A-205ENST00000473295 FSTP19883 344 aa6.34□□□□□ -1.39
SCN1A-205ENST00000473295 CDC25BP30305 580 aa6.34□□□□□ -1.39
SCN1A-205ENST00000473295 CARD10Q9BWT7 1032 aa6.34□□□□□ -1.39
SCN1A-205ENST00000473295 CHRDQ9H2X0 955 aa6.34□□□□□ -1.39
SCN1A-205ENST00000473295 SH2B1Q9NRF2 756 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-205ENST00000473295 A6NHS1 94 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 NFKBIEO00221 500 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 TNFRSF21O75509 655 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 ABL1P00519 1130 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 MTMR3Q13615 1198 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 KLHDC7BQ96G42 594 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 RNF208Q9H0X6 261 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 C1orf115Q9H7X2 142 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 EGFL7Q9UHF1 273 aa6.33□□□□□ -1.4
SCN1A-205ENST00000473295 TM4SF5O14894 197 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 WISP1O95388 367 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 ANKRD34AQ69YU3 496 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 BSNDQ8WZ55 320 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 UTP4Q969X6 686 aaKnown RBP6.32□□□□□ -1.4
SCN1A-205ENST00000473295 UBL7Q96S82 380 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-205ENST00000473295 OSMRQ99650 979 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 KCNK4Q9NYG8 393 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 STOML1Q9UBI4 398 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 SOX13Q9UN79 622 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 AMOTL2Q9Y2J4 779 aa6.32□□□□□ -1.4
SCN1A-205ENST00000473295 EREGO14944 169 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 SART1O43290 800 aaKnown RBP6.31□□□□□ -1.4
SCN1A-205ENST00000473295 HYAL3O43820 417 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-205ENST00000473295 FZD6O60353 706 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 IGLV1-40P01703 118 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 NEFLP07196 543 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 ACPPP15309 386 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 PDE4CQ08493 712 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 C19orf57Q0VDD7 668 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 PHLDB3Q6NSJ2 640 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 ADAMTSL4Q6UY14 1074 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 KIAA1211Q6ZU35 1233 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 GJD3Q8N144 294 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 FOXD4L4Q8WXT5 416 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-205ENST00000473295 NXPE3Q969Y0 559 aa6.31□□□□□ -1.4
SCN1A-205ENST00000473295 FAM46AQ96IP4 442 aaKnown RBP6.31□□□□□ -1.4
SCN1A-205ENST00000473295 IKBKEQ14164 716 aa6.3□□□□□ -1.4
SCN1A-205ENST00000473295 SLC7A3Q8WY07 619 aa6.3□□□□□ -1.4
SCN1A-205ENST00000473295 ZKSCAN3Q9BRR0 538 aa6.3□□□□□ -1.4
SCN1A-205ENST00000473295 RUSC1Q9BVN2 902 aa6.3□□□□□ -1.4
SCN1A-205ENST00000473295 SOX17Q9H6I2 414 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-205ENST00000473295 HIF3AQ9Y2N7 669 aa6.3□□□□□ -1.4
SCN1A-205ENST00000473295 ADAM11O75078 769 aa6.29□□□□□ -1.4
SCN1A-205ENST00000473295 ZNF211Q13398 564 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-205ENST00000473295 FDX2Q6P4F2 183 aa6.29□□□□□ -1.4
SCN1A-205ENST00000473295 ARMC10Q8N2F6 343 aa6.29□□□□□ -1.4
SCN1A-205ENST00000473295 UBASH3BQ8TF42 649 aa6.29□□□□□ -1.4
SCN1A-205ENST00000473295 MYRFLQ96LU7 910 aa6.29□□□□□ -1.4
SCN1A-205ENST00000473295 BHLHE41Q9C0J9 482 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-205ENST00000473295 FOXD3Q9UJU5 478 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-205ENST00000473295 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-205ENST00000473295 MEGF11A6BM72 1044 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms