RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 SPEF2Q9C093 1822 aa12.2□□□□□ -0.46
SF3A1-207ENST00000471342 NPHP1O15259 732 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 CHGBP05060 677 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 ATP5JP18859 108 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 ATP2B4P23634 1241 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 ARID4AP29374 1257 aaPredicted RBP12.19□□□□□ -0.46
SF3A1-207ENST00000471342 GYG1P46976 350 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 CCDC102BQ68D86 513 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 PI16Q6UXB8 463 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 TDRD7Q8NHU6 1098 aaKnown RBP12.19□□□□□ -0.46
SF3A1-207ENST00000471342 ZNF384Q8TF68 577 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 PSMD1Q99460 953 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 KCNQ5Q9NR82 932 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 ARAP2Q8WZ64 1704 aa12.19□□□□□ -0.46
SF3A1-207ENST00000471342 YDJCA8MPS7 323 aa12.18□□□□□ -0.46
SF3A1-207ENST00000471342 MCAMP43121 646 aa12.18□□□□□ -0.46
SF3A1-207ENST00000471342 DALRD3Q5D0E6 543 aaKnown RBP12.18□□□□□ -0.46
SF3A1-207ENST00000471342 TAF7LQ5H9L4 462 aa12.18□□□□□ -0.46
SF3A1-207ENST00000471342 CLASRPQ8N2M8 674 aaKnown RBP12.18□□□□□ -0.46
SF3A1-207ENST00000471342 MPNDQ8N594 471 aa12.18□□□□□ -0.46
SF3A1-207ENST00000471342 EDC3Q96F86 508 aaKnown RBP12.18□□□□□ -0.46
SF3A1-207ENST00000471342 ANKRD2Q9GZV1 360 aa12.18□□□□□ -0.46
SF3A1-207ENST00000471342 NSFL1CQ9UNZ2 370 aaKnown RBP12.18□□□□□ -0.46
SF3A1-207ENST00000471342 NDUFB9Q9Y6M9 179 aa12.18□□□□□ -0.46
SF3A1-207ENST00000471342 ZNF646O15015 1829 aaPredicted RBP12.18□□□□□ -0.46
SF3A1-207ENST00000471342 MED23Q9ULK4 1368 aa12.18□□□□□ -0.46
SF3A1-207ENST00000471342 LTBP3Q9NS15 1303 aa12.17□□□□□ -0.46
SF3A1-207ENST00000471342 IL1R1P14778 569 aa12.17□□□□□ -0.46
SF3A1-207ENST00000471342 RASGRF1Q13972 1273 aa12.17□□□□□ -0.46
SF3A1-207ENST00000471342 GRIK5Q16478 980 aa12.17□□□□□ -0.46
SF3A1-207ENST00000471342 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.17□□□□□ -0.46
SF3A1-207ENST00000471342 ANTXR1Q9H6X2 564 aa12.17□□□□□ -0.46
SF3A1-207ENST00000471342 HMG20BQ9P0W2 317 aa12.17□□□□□ -0.46
SF3A1-207ENST00000471342 ZNF219Q9P2Y4 722 aaPredicted RBP12.17□□□□□ -0.46
SF3A1-207ENST00000471342 AOX1Q06278 1338 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 MX1P20591 662 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 KIAA2012Q0VF49 1180 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 TTC22Q5TAA0 569 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 CC2D2BQ6DHV5 1058 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 HAUS7Q99871 368 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 IL25Q9H293 177 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 CD209Q9NNX6 404 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 ECHDC1Q9NTX5 307 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 GGA1Q9UJY5 639 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 AKAP2Q9Y2D5 859 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 FER1L6Q2WGJ9 1857 aa12.16□□□□□ -0.46
SF3A1-207ENST00000471342 AKAP11Q9UKA4 1901 aa12.15□□□□□ -0.46
SF3A1-207ENST00000471342 TTC41PQ6P2S7 1318 aa12.15□□□□□ -0.46
SF3A1-207ENST00000471342 UFL1O94874 794 aa12.15□□□□□ -0.46
SF3A1-207ENST00000471342 CYP2E1P05181 493 aaPredicted RBP12.15□□□□□ -0.46
SF3A1-207ENST00000471342 FKBP4Q02790 459 aaKnown RBP eCLIP12.15□□□□□ -0.46
SF3A1-207ENST00000471342 RASSF7Q02833 373 aa12.15□□□□□ -0.46
SF3A1-207ENST00000471342 OS9Q13438 667 aaPredicted RBP12.15□□□□□ -0.46
SF3A1-207ENST00000471342 SLFNL1Q499Z3 407 aa12.15□□□□□ -0.46
SF3A1-207ENST00000471342 CCDC93Q567U6 631 aa12.15□□□□□ -0.46
SF3A1-207ENST00000471342 PIH1D3Q9NQM4 214 aaKnown RBP12.15□□□□□ -0.46
SF3A1-207ENST00000471342 PPP1R1BQ9UD71 204 aaPredicted RBP12.15□□□□□ -0.46
SF3A1-207ENST00000471342 SDSP20132 328 aa12.14□□□□□ -0.47
SF3A1-207ENST00000471342 ZAP70P43403 619 aa12.14□□□□□ -0.47
SF3A1-207ENST00000471342 DPP8Q6V1X1 898 aaPredicted RBP12.14□□□□□ -0.47
SF3A1-207ENST00000471342 CERS5Q8N5B7 392 aa12.14□□□□□ -0.47
SF3A1-207ENST00000471342 NEUROD6Q96NK8 337 aa12.14□□□□□ -0.47
SF3A1-207ENST00000471342 BCS1LQ9Y276 419 aa12.14□□□□□ -0.47
SF3A1-207ENST00000471342 CACNA1SQ13698 1873 aa12.14□□□□□ -0.47
SF3A1-207ENST00000471342 FAM205AQ6ZU69 1335 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 CHD4Q14839 1912 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 IFIT2P09913 472 aaKnown RBP12.13□□□□□ -0.47
SF3A1-207ENST00000471342 IFIT1P09914 478 aaKnown RBP12.13□□□□□ -0.47
SF3A1-207ENST00000471342 SLC5A1P13866 664 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 HIBADHP31937 336 aaKnown RBP12.13□□□□□ -0.47
SF3A1-207ENST00000471342 RGS3P49796 1198 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 AOC3Q16853 763 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 BMP2KLQ5H9B9 411 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 RTKN2Q8IZC4 609 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 GMLQ99445 158 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 BOLA2Q9H3K6 86 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 ZNF277Q9NRM2 450 aaPredicted RBP12.13□□□□□ -0.47
SF3A1-207ENST00000471342 ANKIB1Q9P2G1 1089 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 ARFGEF1Q9Y6D6 1849 aa12.13□□□□□ -0.47
SF3A1-207ENST00000471342 PDS5AQ29RF7 1337 aaKnown RBP12.12□□□□□ -0.47
SF3A1-207ENST00000471342 SCN9AQ15858 1988 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 TCRBV5S4A2TA0A5A2 114 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 RIMBP2O15034 1052 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 DOK7Q18PE1 504 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 GRIPAP1Q4V328 841 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 TBC1D9Q6ZT07 1266 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 KLHL34Q8N239 644 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 MXD3Q9BW11 206 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 VPS33BQ9H267 617 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 SNRKQ9NRH2 765 aa12.12□□□□□ -0.47
SF3A1-207ENST00000471342 IQSEC3Q9UPP2 1182 aaPredicted RBP12.12□□□□□ -0.47
SF3A1-207ENST00000471342 FZD9O00144 591 aa12.11□□□□□ -0.47
SF3A1-207ENST00000471342 FOXP2O15409 715 aa12.11□□□□□ -0.47
SF3A1-207ENST00000471342 GLRX3O76003 335 aaKnown RBP12.11□□□□□ -0.47
SF3A1-207ENST00000471342 MAP4K4O95819 1239 aaPredicted RBP12.11□□□□□ -0.47
SF3A1-207ENST00000471342 WASHC4Q2M389 1173 aa12.11□□□□□ -0.47
SF3A1-207ENST00000471342 C8orf34Q49A92 452 aa12.11□□□□□ -0.47
SF3A1-207ENST00000471342 COA1Q9GZY4 146 aa12.11□□□□□ -0.47
SF3A1-207ENST00000471342 SALL1Q9NSC2 1324 aa12.11□□□□□ -0.47
SF3A1-207ENST00000471342 C6orf229H3BNL8 230 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms