RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 CCDC85AQ96PX6 553 aaPredicted RBP11.62□□□□□ -0.55
SF3A1-206ENST00000471037 MAP3K2Q9Y2U5 619 aa11.62□□□□□ -0.55
SF3A1-206ENST00000471037 ZNF646O15015 1829 aaPredicted RBP11.61□□□□□ -0.55
SF3A1-206ENST00000471037 IGKV5-2P06315 115 aa11.61□□□□□ -0.55
SF3A1-206ENST00000471037 KSR2Q6VAB6 950 aa11.61□□□□□ -0.55
SF3A1-206ENST00000471037 TTLL11Q8NHH1 800 aa11.61□□□□□ -0.55
SF3A1-206ENST00000471037 JARID2Q92833 1246 aaPredicted RBP11.61□□□□□ -0.55
SF3A1-206ENST00000471037 BSDC1Q9NW68 430 aaPredicted RBP11.61□□□□□ -0.55
SF3A1-206ENST00000471037 MYO3BQ8WXR4 1341 aa11.6□□□□□ -0.55
SF3A1-206ENST00000471037 AKAP11Q9UKA4 1901 aa11.6□□□□□ -0.55
SF3A1-206ENST00000471037 PI4KAP2A4QPH2 592 aa11.6□□□□□ -0.55
SF3A1-206ENST00000471037 CCDC27Q2M243 656 aa11.6□□□□□ -0.55
SF3A1-206ENST00000471037 PI4KAP1Q8N8J0 262 aa11.6□□□□□ -0.55
SF3A1-206ENST00000471037 GREM2Q9H772 168 aa11.6□□□□□ -0.55
SF3A1-206ENST00000471037 MINPP1Q9UNW1 487 aa11.6□□□□□ -0.55
SF3A1-206ENST00000471037 MYH3P11055 1940 aa11.59□□□□□ -0.55
SF3A1-206ENST00000471037 MMP14P50281 582 aa11.59□□□□□ -0.55
SF3A1-206ENST00000471037 CCT4P50991 539 aaKnown RBP11.59□□□□□ -0.55
SF3A1-206ENST00000471037 NEXNQ0ZGT2 675 aa11.59□□□□□ -0.55
SF3A1-206ENST00000471037 NBPF9Q3BBW0 867 aa11.59□□□□□ -0.55
SF3A1-206ENST00000471037 DACT2Q5SW24 774 aa11.59□□□□□ -0.55
SF3A1-206ENST00000471037 STRIP1Q5VSL9 837 aa11.59□□□□□ -0.55
SF3A1-206ENST00000471037 CTU1Q7Z7A3 348 aaKnown RBP11.59□□□□□ -0.55
SF3A1-206ENST00000471037 TSPYL6Q8N831 410 aa11.59□□□□□ -0.55
SF3A1-206ENST00000471037 WTIPA6NIX2 430 aaPredicted RBP11.58□□□□□ -0.56
SF3A1-206ENST00000471037 NEURL1BA8MQ27 555 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 WNT10BO00744 389 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 OGFOD1Q8N543 542 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 PLA2G12BQ9BX93 195 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 STK31Q9BXU1 1019 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 COA1Q9GZY4 146 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 LEMD3Q9Y2U8 911 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 ZNF521Q96K83 1311 aa11.58□□□□□ -0.56
SF3A1-206ENST00000471037 H7C1W4 665 aa11.57□□□□□ -0.56
SF3A1-206ENST00000471037 CWF19L2Q2TBE0 894 aaKnown RBP11.57□□□□□ -0.56
SF3A1-206ENST00000471037 NOM1Q5C9Z4 860 aaKnown RBP11.57□□□□□ -0.56
SF3A1-206ENST00000471037 SALL2Q9Y467 1007 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-206ENST00000471037 SPEF2Q9C093 1822 aa11.57□□□□□ -0.56
SF3A1-206ENST00000471037 UBE2Q2LH0YL09 131 aa11.56□□□□□ -0.56
SF3A1-206ENST00000471037 IGHMBP2P38935 993 aaKnown RBP11.56□□□□□ -0.56
SF3A1-206ENST00000471037 MOB2Q70IA6 237 aa11.56□□□□□ -0.56
SF3A1-206ENST00000471037 UBE3BQ7Z3V4 1068 aa11.56□□□□□ -0.56
SF3A1-206ENST00000471037 TXNRD3Q86VQ6 643 aa11.56□□□□□ -0.56
SF3A1-206ENST00000471037 WWC1Q8IX03 1113 aa11.56□□□□□ -0.56
SF3A1-206ENST00000471037 TSR2Q969E8 191 aaKnown RBP11.56□□□□□ -0.56
SF3A1-206ENST00000471037 ZBED3Q96IU2 234 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-206ENST00000471037 MXD3Q9BW11 206 aa11.56□□□□□ -0.56
SF3A1-206ENST00000471037 ZNF804BA4D1E1 1349 aa11.56□□□□□ -0.56
SF3A1-206ENST00000471037 CENPBP07199 599 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-206ENST00000471037 ITGA6P23229 1130 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 NF2P35240 595 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 TM4SF4P48230 202 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 CASP7P55210 303 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 SOX10P56693 466 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 PKN2Q16513 984 aaKnown RBP11.55□□□□□ -0.56
SF3A1-206ENST00000471037 TWISTNBQ3B726 338 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-206ENST00000471037 PRAMEF18Q5VWM3 479 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 APOBEC3FQ8IUX4 373 aaKnown RBP11.55□□□□□ -0.56
SF3A1-206ENST00000471037 WDR63Q8IWG1 891 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 CFHR5Q9BXR6 569 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 ANKRD2Q9GZV1 360 aa11.55□□□□□ -0.56
SF3A1-206ENST00000471037 SCAF8Q9UPN6 1271 aaKnown RBP11.55□□□□□ -0.56
SF3A1-206ENST00000471037 COL1A1P02452 1464 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-206ENST00000471037 TNRC18O15417 2968 aaPredicted RBP11.54□□□□□ -0.56
SF3A1-206ENST00000471037 SASH1O94885 1247 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 CSF1RP07333 972 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 TTLL12Q14166 644 aaPredicted RBP11.54□□□□□ -0.56
SF3A1-206ENST00000471037 GCKRQ14397 625 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 TTLL5Q6EMB2 1281 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 G2E3Q7L622 706 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 ZNF296Q8WUU4 475 aaPredicted RBP11.54□□□□□ -0.56
SF3A1-206ENST00000471037 FBXW7Q969H0 707 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 HDAC9Q9UKV0 1011 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 HPS5Q9UPZ3 1129 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 IL16Q14005 1332 aa11.54□□□□□ -0.56
SF3A1-206ENST00000471037 TBC1D8O95759 1140 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 SLC4A2P04920 1241 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 KLRK1P26718 216 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 SREBF2Q12772 1141 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 FLIIQ13045 1269 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 LDLRAD1Q5T700 205 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 ARMC9Q7Z3E5 817 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 KIAA0825Q8IV33 1275 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 LINS1Q8NG48 757 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 MPHOSPH8Q99549 860 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 MYH16Q9H6N6 1097 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 IRS2Q9Y4H2 1338 aa11.53□□□□□ -0.56
SF3A1-206ENST00000471037 PDE4DIPQ5VU43 2346 aa11.52□□□□□ -0.57
SF3A1-206ENST00000471037 GPR25O00155 361 aa11.52□□□□□ -0.57
SF3A1-206ENST00000471037 GTF2IP78347 998 aa11.52□□□□□ -0.57
SF3A1-206ENST00000471037 PTPN12Q05209 780 aaKnown RBP11.52□□□□□ -0.57
SF3A1-206ENST00000471037 CHRNDQ07001 517 aa11.52□□□□□ -0.57
SF3A1-206ENST00000471037 C15orf52Q6ZUT6 534 aaKnown RBP11.52□□□□□ -0.57
SF3A1-206ENST00000471037 MTMR14Q8NCE2 650 aa11.52□□□□□ -0.57
SF3A1-206ENST00000471037 DNAAF4Q8WXU2 420 aa11.52□□□□□ -0.57
SF3A1-206ENST00000471037 CD209Q9NNX6 404 aa11.52□□□□□ -0.57
SF3A1-206ENST00000471037 E9PSI1 815 aa11.51□□□□□ -0.57
SF3A1-206ENST00000471037 MAP3K11Q16584 847 aa11.51□□□□□ -0.57
SF3A1-206ENST00000471037 SPRYD7Q5W111 196 aa11.51□□□□□ -0.57
SF3A1-206ENST00000471037 PCDH10Q9P2E7 1040 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms