RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TLL1O43897 1013 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 COQ9O75208 318 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 NR1I2O75469 434 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 GYS2P54840 703 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 COPS2P61201 443 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 VARS2Q5ST30 1063 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 SDE2Q6IQ49 451 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 C16orf46Q6P387 395 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 RPAINQ86UA6 219 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 LAPTM4BQ86VI4 370 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 AMOTL1Q8IY63 956 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 CCDC94Q9BW85 323 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 NBPF3Q9H094 633 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 TMX4Q9H1E5 349 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 NRBP1Q9UHY1 535 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 ANAPC4Q9UJX5 808 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 INPP5FQ9Y2H2 1132 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 COMMD10Q9Y6G5 202 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 ATAD2Q6PL18 1390 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 ABCC5O15440 1437 aa5.87□□□□□ -1.47
CCDC88A-209ENST00000456975 PZPP20742 1482 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 CFAP69A5D8W1 941 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 LETM1O95202 739 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 IGFBP4P22692 258 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 BCAMP50895 628 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 MMP16P51512 607 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 BMS1Q14692 1282 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 EGFLAMQ63HQ2 1017 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 ANKLE2Q86XL3 938 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 SLC43A3Q8NBI5 491 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 COL26A1Q96A83 441 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 SLC10A4Q96EP9 437 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 SPACA7Q96KW9 195 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 SLC4A5Q9BY07 1137 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 PNNQ9H307 717 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 METTL5Q9NRN9 209 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 LRFN2Q9ULH4 789 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 PDZRN3Q9UPQ7 1066 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 TBX22Q9Y458 520 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 CTDP1Q9Y5B0 961 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 UBR1Q8IWV7 1749 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 GOLGA6L3A6NEY3 463 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 TNFRSF10BO14763 440 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 TPM2P07951 284 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 FAM200BP0CF97 657 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 COPB2P35606 906 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 PPP4CP60510 307 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 TCEAL1Q15170 157 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 MSS51Q4VC12 460 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 FAM210AQ96ND0 272 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 JADE2Q9NQC1 790 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 FAM13BQ9NYF5 915 aa5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 DMGDHQ9UI17 866 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-209ENST00000456975 NLRP1Q9C000 1473 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 FOXO3O43524 673 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 SCNN1DP51172 638 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 C4orf46Q504U0 113 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 RNF20Q5VTR2 975 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 C11orf96Q7Z7L8 435 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 JAZF1Q86VZ6 243 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 MRPL50Q8N5N7 158 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 FAM129BQ96TA1 746 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 CFHR5Q9BXR6 569 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 GTPBP4Q9BZE4 634 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 GABBR1Q9UBS5 961 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 PUF60Q9UHX1 559 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 HPS5Q9UPZ3 1129 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 DAPK1P53355 1430 aa5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 RRBP1Q9P2E9 1410 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-209ENST00000456975 M0R2N6 131 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 MPHOSPH10O00566 681 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 CT47A1Q5JQC4 288 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 NKX2-3Q8TAU0 364 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 DMRTB1Q96MA1 342 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 GMLQ99445 158 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 NLRP2Q9NX02 1062 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 STIM2Q9P246 746 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 POLIQ9UNA4 740 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 MRPL42Q9Y6G3 142 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 CEP152O94986 1710 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 DHX29Q7Z478 1369 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 WDHD1O75717 1129 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 TSPY4P0CV99 314 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 TSPY10P0CW01 314 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 ATP2B2Q01814 1243 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 ARID5AQ03989 594 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 ORC1Q13415 861 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 GNL2Q13823 731 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 MCF2L2Q86YR7 1114 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 TTC30BQ8N4P2 665 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 PRR14Q9BWN1 585 aa5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 DDX41Q9UJV9 622 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-209ENST00000456975 CCDC172P0C7W6 258 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 ZSCAN20P17040 1043 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 NAT1P18440 290 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 EPHA4P54764 986 aa5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 CCT2P78371 535 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 ENOX2Q16206 610 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 BPHLQ86WA6 291 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-209ENST00000456975 ACRBPQ8NEB7 543 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms