RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 CNKSR1Q969H4 720 aa10.93□□□□□ -0.66
SYNE1-214ENST00000454018 CDC5LQ99459 802 aaKnown RBP10.93□□□□□ -0.66
SYNE1-214ENST00000454018 GREM2Q9H772 168 aa10.93□□□□□ -0.66
SYNE1-214ENST00000454018 CHMP3Q9Y3E7 222 aa10.93□□□□□ -0.66
SYNE1-214ENST00000454018 CHD4Q14839 1912 aa10.93□□□□□ -0.66
SYNE1-214ENST00000454018 A0A0G2JLW4 131 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 ANKRD18BA2A2Z9 1011 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 NEFLP07196 543 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 ITGA6P23229 1130 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 IFIT5Q13325 482 aaKnown RBP10.92□□□□□ -0.66
SYNE1-214ENST00000454018 GRAPQ13588 217 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 HIC1Q14526 733 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 CCDC57Q2TAC2 916 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 DPY19L2Q6NUT2 758 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 TMC4Q7Z404 712 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 GRAPLQ8TC17 118 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-214ENST00000454018 ZNF622Q969S3 477 aaKnown RBP eCLIP10.92□□□□□ -0.66
SYNE1-214ENST00000454018 PIM2Q9P1W9 311 aa10.92□□□□□ -0.66
SYNE1-214ENST00000454018 KCNA3P22001 575 aa10.91□□□□□ -0.66
SYNE1-214ENST00000454018 PRPF40BQ6NWY9 871 aaKnown RBP10.91□□□□□ -0.66
SYNE1-214ENST00000454018 PLPP6Q8IY26 295 aa10.91□□□□□ -0.66
SYNE1-214ENST00000454018 TTLL6Q8N841 843 aa10.91□□□□□ -0.66
SYNE1-214ENST00000454018 TMC2Q8TDI7 906 aa10.91□□□□□ -0.66
SYNE1-214ENST00000454018 MS4A3Q96HJ5 214 aa10.91□□□□□ -0.66
SYNE1-214ENST00000454018 CCDC85AQ96PX6 553 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-214ENST00000454018 SRGAP3O43295 1099 aa10.9□□□□□ -0.66
SYNE1-214ENST00000454018 DALRD3Q5D0E6 543 aaKnown RBP10.9□□□□□ -0.66
SYNE1-214ENST00000454018 CEP85Q6P2H3 762 aa10.9□□□□□ -0.66
SYNE1-214ENST00000454018 ANKRD18AQ8IVF6 992 aa10.9□□□□□ -0.66
SYNE1-214ENST00000454018 RPAP2Q8IXW5 612 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-214ENST00000454018 PCMTD1Q96MG8 357 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-214ENST00000454018 DUOX1Q9NRD9 1551 aa10.9□□□□□ -0.67
SYNE1-214ENST00000454018 TIAM2Q8IVF5 1701 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 PPEF1O14829 653 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 HMMRO75330 724 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 BBOX1O75936 387 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 CD44P16070 742 aaKnown RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 IGHMBP2P38935 993 aaKnown RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 IRX6P78412 446 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 TAF7LQ5H9L4 462 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 MICALL2Q8IY33 904 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 EXOC6Q8TAG9 804 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 CELF1Q92879 486 aaKnown RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 SEC31BQ9NQW1 1179 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 PSME4Q14997 1843 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 GOLGB1Q14789 3259 aaKnown RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 RPS8P62241 208 aaKnown RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 MAP3K9P80192 1104 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 ATP8B2P98198 1209 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 SOGA3Q5TF21 947 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 SSH3Q8TE77 659 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 MPHOSPH8Q99549 860 aa10.89□□□□□ -0.67
SYNE1-214ENST00000454018 REPIN1Q9BWE0 567 aaKnown RBP10.89□□□□□ -0.67
SYNE1-214ENST00000454018 SNED1Q8TER0 1413 aa10.88□□□□□ -0.67
SYNE1-214ENST00000454018 PNMA6EA0A0J9YXQ4 647 aa10.88□□□□□ -0.67
SYNE1-214ENST00000454018 RFX5P48382 616 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-214ENST00000454018 MCM6Q14566 821 aa10.88□□□□□ -0.67
SYNE1-214ENST00000454018 CC2D2BQ6DHV5 1058 aa10.88□□□□□ -0.67
SYNE1-214ENST00000454018 TMX4Q9H1E5 349 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-214ENST00000454018 COPRSQ9NQ92 184 aa10.88□□□□□ -0.67
SYNE1-214ENST00000454018 BSDC1Q9NW68 430 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-214ENST00000454018 BCS1LQ9Y276 419 aa10.88□□□□□ -0.67
SYNE1-214ENST00000454018 PTPN12Q05209 780 aaKnown RBP10.87□□□□□ -0.67
SYNE1-214ENST00000454018 GRIPAP1Q4V328 841 aa10.87□□□□□ -0.67
SYNE1-214ENST00000454018 ATP6V0A2Q9Y487 856 aa10.87□□□□□ -0.67
SYNE1-214ENST00000454018 CIAO1O76071 339 aa10.86□□□□□ -0.67
SYNE1-214ENST00000454018 CCDC93Q567U6 631 aa10.86□□□□□ -0.67
SYNE1-214ENST00000454018 CHRDL2Q6WN34 429 aa10.86□□□□□ -0.67
SYNE1-214ENST00000454018 LDHAL6AQ6ZMR3 332 aa10.86□□□□□ -0.67
SYNE1-214ENST00000454018 SP8Q8IXZ3 490 aa10.86□□□□□ -0.67
SYNE1-214ENST00000454018 ZNF594Q96JF6 807 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-214ENST00000454018 CNNM1Q9NRU3 951 aa10.86□□□□□ -0.67
SYNE1-214ENST00000454018 XDHP47989 1333 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 MROH5Q6ZUA9 1318 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 TTLL13PA6NNM8 815 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 EYA2O00167 538 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 SIRT2Q8IXJ6 389 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 PIP4P2Q8N4L2 257 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 KLHDC4Q8TBB5 520 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 C7orf43Q8WVR3 580 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 WWC3Q9ULE0 1092 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 PCDHB15Q9Y5E8 787 aa10.85□□□□□ -0.67
SYNE1-214ENST00000454018 C21orf2O43822 256 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 IL15P40933 162 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-214ENST00000454018 HSP90AB4PQ58FF6 505 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 RTKN2Q8IZC4 609 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 DDX12PQ92771 950 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 ANKRD2Q9GZV1 360 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 SIL1Q9H173 461 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 PA2G4Q9UQ80 394 aaKnown RBP10.84□□□□□ -0.67
SYNE1-214ENST00000454018 ZNF646O15015 1829 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-214ENST00000454018 LTBP3Q9NS15 1303 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 C2orf72A6NCS6 295 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 CHRNDQ07001 517 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 HDAC1Q13547 482 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-214ENST00000454018 ERICH6BQ5W0A0 696 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 PELP1Q8IZL8 1130 aaKnown RBP10.84□□□□□ -0.67
SYNE1-214ENST00000454018 MINPP1Q9UNW1 487 aa10.84□□□□□ -0.67
SYNE1-214ENST00000454018 NOP58Q9Y2X3 529 aaKnown RBP10.84□□□□□ -0.67
SYNE1-214ENST00000454018 RIPOR2Q9Y4F9 1068 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms