RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 CCDC39Q9UFE4 941 aa16.82■□□□□ 0.28
LIMD1-202ENST00000440097 CAMTA2O94983 1202 aa16.81■□□□□ 0.28
LIMD1-202ENST00000440097 WASHC4Q2M389 1173 aa16.81■□□□□ 0.28
LIMD1-202ENST00000440097 NSFL1CQ9UNZ2 370 aaKnown RBP16.81■□□□□ 0.28
LIMD1-202ENST00000440097 RIPOR2Q9Y4F9 1068 aa16.81■□□□□ 0.28
LIMD1-202ENST00000440097 SASS6Q6UVJ0 657 aa16.81■□□□□ 0.28
LIMD1-202ENST00000440097 CCDC83Q8IWF9 413 aa16.81■□□□□ 0.28
LIMD1-202ENST00000440097 MPHOSPH8Q99549 860 aa16.81■□□□□ 0.28
LIMD1-202ENST00000440097 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.81■□□□□ 0.28
LIMD1-202ENST00000440097 BCL9LQ86UU0 1499 aa16.8■□□□□ 0.28
LIMD1-202ENST00000440097 PI16Q6UXB8 463 aa16.8■□□□□ 0.28
LIMD1-202ENST00000440097 HMG20BQ9P0W2 317 aa16.8■□□□□ 0.28
LIMD1-202ENST00000440097 SMC3Q9UQE7 1217 aa16.8■□□□□ 0.28
LIMD1-202ENST00000440097 ZNF652Q9Y2D9 606 aa16.8■□□□□ 0.28
LIMD1-202ENST00000440097 BICDL1Q6ZP65 573 aa16.8■□□□□ 0.28
LIMD1-202ENST00000440097 RFX7Q2KHR2 1363 aa16.79■□□□□ 0.28
LIMD1-202ENST00000440097 LARGE1O95461 756 aa16.79■□□□□ 0.28
LIMD1-202ENST00000440097 SCARF1Q14162 830 aa16.79■□□□□ 0.28
LIMD1-202ENST00000440097 RNF214Q8ND24 703 aa16.79■□□□□ 0.28
LIMD1-202ENST00000440097 KCNB2Q92953 911 aa16.79■□□□□ 0.28
LIMD1-202ENST00000440097 U3KPZ7 1027 aaPredicted RBP16.79■□□□□ 0.28
LIMD1-202ENST00000440097 ZAP70P43403 619 aa16.79■□□□□ 0.28
LIMD1-202ENST00000440097 LRRFIP1Q32MZ4 808 aaKnown RBP16.79■□□□□ 0.28
LIMD1-202ENST00000440097 PARP10Q53GL7 1025 aa16.79■□□□□ 0.28
LIMD1-202ENST00000440097 MTERF4Q7Z6M4 381 aaKnown RBP16.79■□□□□ 0.28
LIMD1-202ENST00000440097 RNF113AO15541 343 aaKnown RBP16.78■□□□□ 0.28
LIMD1-202ENST00000440097 FGD1P98174 961 aa16.78■□□□□ 0.28
LIMD1-202ENST00000440097 HELLSQ9NRZ9 838 aa16.78■□□□□ 0.28
LIMD1-202ENST00000440097 PDE8BO95263 885 aa16.78■□□□□ 0.28
LIMD1-202ENST00000440097 GTF2E1P29083 439 aaPredicted RBP16.78■□□□□ 0.28
LIMD1-202ENST00000440097 NECAB1Q8N987 351 aa16.78■□□□□ 0.28
LIMD1-202ENST00000440097 LINC00116Q8NCU8 138 aa16.78■□□□□ 0.28
LIMD1-202ENST00000440097 SEC31BQ9NQW1 1179 aa16.78■□□□□ 0.28
LIMD1-202ENST00000440097 ANKRD36CQ5JPF3 1778 aa16.78■□□□□ 0.28
LIMD1-202ENST00000440097 KRT32Q14532 448 aa16.77■□□□□ 0.28
LIMD1-202ENST00000440097 SMAP1Q8IYB5 467 aaPredicted RBP16.77■□□□□ 0.28
LIMD1-202ENST00000440097 FNBP4Q8N3X1 1017 aaPredicted RBP16.77■□□□□ 0.28
LIMD1-202ENST00000440097 RIC1Q4ADV7 1423 aa16.77■□□□□ 0.28
LIMD1-202ENST00000440097 ZSCAN31Q96LW9 406 aaPredicted RBP16.77■□□□□ 0.28
LIMD1-202ENST00000440097 RPS6KB1P23443 525 aa16.77■□□□□ 0.27
LIMD1-202ENST00000440097 CCDC152Q4G0S7 254 aa16.77■□□□□ 0.27
LIMD1-202ENST00000440097 ZMYM1Q5SVZ6 1142 aa16.77■□□□□ 0.27
LIMD1-202ENST00000440097 NEK1Q96PY6 1258 aa16.77■□□□□ 0.27
LIMD1-202ENST00000440097 SH2B1Q9NRF2 756 aaPredicted RBP16.77■□□□□ 0.27
LIMD1-202ENST00000440097 MYH14Q7Z406 1995 aaKnown RBP16.76■□□□□ 0.27
LIMD1-202ENST00000440097 BRD1O95696 1058 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 CYP21A2P08686 494 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.76■□□□□ 0.27
LIMD1-202ENST00000440097 MAST3O60307 1309 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 RPAP1Q9BWH6 1393 aaPredicted RBP16.76■□□□□ 0.27
LIMD1-202ENST00000440097 HSP90B1P14625 803 aaKnown RBP16.76■□□□□ 0.27
LIMD1-202ENST00000440097 STK3Q13188 491 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 ANKRD1Q15327 319 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 ME3Q16798 604 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 USPL1Q5W0Q7 1092 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 TPCN1Q9ULQ1 816 aa16.76■□□□□ 0.27
LIMD1-202ENST00000440097 WDR33Q9C0J8 1336 aaKnown RBP16.76■□□□□ 0.27
LIMD1-202ENST00000440097 MYH3P11055 1940 aa16.75■□□□□ 0.27
LIMD1-202ENST00000440097 IGHMBP2P38935 993 aaKnown RBP16.75■□□□□ 0.27
LIMD1-202ENST00000440097 AK7Q96M32 723 aa16.75■□□□□ 0.27
LIMD1-202ENST00000440097 PRDM10Q9NQV6 1147 aa16.75■□□□□ 0.27
LIMD1-202ENST00000440097 SPATA31A6Q5VVP1 1343 aa16.75■□□□□ 0.27
LIMD1-202ENST00000440097 SNAP23O00161 211 aa16.75■□□□□ 0.27
LIMD1-202ENST00000440097 IDH1O75874 414 aaKnown RBP16.75■□□□□ 0.27
LIMD1-202ENST00000440097 PTMAP06454 111 aaKnown RBP16.75■□□□□ 0.27
LIMD1-202ENST00000440097 MCAMP43121 646 aa16.75■□□□□ 0.27
LIMD1-202ENST00000440097 PUM3Q15397 648 aaKnown RBP16.75■□□□□ 0.27
LIMD1-202ENST00000440097 M0R2C6 588 aa16.74■□□□□ 0.27
LIMD1-202ENST00000440097 HSPD1P10809 573 aaKnown RBP16.74■□□□□ 0.27
LIMD1-202ENST00000440097 OSBP2Q969R2 916 aa16.74■□□□□ 0.27
LIMD1-202ENST00000440097 MROH5Q6ZUA9 1318 aa16.74■□□□□ 0.27
LIMD1-202ENST00000440097 NTSR2O95665 410 aa16.74■□□□□ 0.27
LIMD1-202ENST00000440097 GJB2P29033 226 aa16.74■□□□□ 0.27
LIMD1-202ENST00000440097 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.74■□□□□ 0.276e-7■■□□□ 12
LIMD1-202ENST00000440097 AFF2P51816 1311 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 GNPATO15228 680 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 PHKA1P46020 1223 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 CCDC102BQ68D86 513 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 VGLL2Q8N8G2 317 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 LRRC2Q9BYS8 371 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 MBD3O95983 291 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 ZFYP08048 801 aaPredicted RBP16.73■□□□□ 0.27
LIMD1-202ENST00000440097 KIAA2012Q0VF49 1180 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 TPRNQ4KMQ1 711 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 LPIN2Q92539 896 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 DSCC1Q9BVC3 393 aa16.73■□□□□ 0.27
LIMD1-202ENST00000440097 CCNL1Q9UK58 526 aaPredicted RBP16.73■□□□□ 0.27
LIMD1-202ENST00000440097 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.73■□□□□ 0.27
LIMD1-202ENST00000440097 NPHP1O15259 732 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 SLC5A1P13866 664 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 SYT1P21579 422 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 ST3GAL1Q11201 340 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 TSGA10IPQ3SY00 556 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 NAP1L2Q9ULW6 460 aaPredicted RBP16.72■□□□□ 0.27
LIMD1-202ENST00000440097 STX6O43752 255 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 SLC9C2Q5TAH2 1124 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 VPS37CA5D8V6 355 aaPredicted RBP16.72■□□□□ 0.27
LIMD1-202ENST00000440097 ERFEQ4G0M1 354 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 CLEC4GQ6UXB4 293 aa16.72■□□□□ 0.27
LIMD1-202ENST00000440097 TSPY26PQ9H489 355 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms