RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 SOGA3Q5TF21 947 aa25.3■■□□□ 1.64
CHD3-204ENST00000439235 DPP8Q6V1X1 898 aaPredicted RBP25.3■■□□□ 1.64
CHD3-204ENST00000439235 SLC51AQ86UW1 340 aa25.3■■□□□ 1.64
CHD3-204ENST00000439235 PELP1Q8IZL8 1130 aaKnown RBP25.3■■□□□ 1.64
CHD3-204ENST00000439235 C7orf43Q8WVR3 580 aa25.3■■□□□ 1.64
CHD3-204ENST00000439235 LTBP1Q14766 1721 aa25.29■■□□□ 1.64
CHD3-204ENST00000439235 TTC39AQ5SRH9 613 aa25.29■■□□□ 1.64
CHD3-204ENST00000439235 TTC22Q5TAA0 569 aa25.29■■□□□ 1.64
CHD3-204ENST00000439235 TSHZ3Q63HK5 1081 aa25.29■■□□□ 1.64
CHD3-204ENST00000439235 ATP5JP18859 108 aa25.28■■□□□ 1.64
CHD3-204ENST00000439235 CCDC93Q567U6 631 aa25.28■■□□□ 1.64
CHD3-204ENST00000439235 CAVIN4Q5BKX8 364 aa25.28■■□□□ 1.64
CHD3-204ENST00000439235 C15orf52Q6ZUT6 534 aaKnown RBP25.28■■□□□ 1.64
CHD3-204ENST00000439235 TBC1D16Q8TBP0 767 aa25.28■■□□□ 1.64
CHD3-204ENST00000439235 PI4K2BQ8TCG2 481 aa25.28■■□□□ 1.64
CHD3-204ENST00000439235 FHDC1Q9C0D6 1143 aaPredicted RBP25.28■■□□□ 1.64
CHD3-204ENST00000439235 ZNF219Q9P2Y4 722 aaPredicted RBP25.28■■□□□ 1.64
CHD3-204ENST00000439235 C21orf2O43822 256 aa25.27■■□□□ 1.64
CHD3-204ENST00000439235 BMP2KLQ5H9B9 411 aa25.27■■□□□ 1.64
CHD3-204ENST00000439235 NLGN2Q8NFZ4 835 aa25.27■■□□□ 1.64
CHD3-204ENST00000439235 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.27■■□□□ 1.64
CHD3-204ENST00000439235 C6orf229H3BNL8 230 aa25.26■■□□□ 1.63
CHD3-204ENST00000439235 UQCRFS1P1P0C7P4 283 aa25.26■■□□□ 1.63
CHD3-204ENST00000439235 CCDC102BQ68D86 513 aa25.26■■□□□ 1.63
CHD3-204ENST00000439235 OLFM4Q6UX06 510 aa25.26■■□□□ 1.63
CHD3-204ENST00000439235 ZNF512BQ96KM6 892 aaPredicted RBP25.26■■□□□ 1.63
CHD3-204ENST00000439235 MED23Q9ULK4 1368 aa25.26■■□□□ 1.63
CHD3-204ENST00000439235 BRCA1P38398 1863 aaKnown RBP25.26■■□□□ 1.63
CHD3-204ENST00000439235 VPS37DQ86XT2 251 aa25.25■■□□□ 1.63
CHD3-204ENST00000439235 RTKN2Q8IZC4 609 aa25.25■■□□□ 1.63
CHD3-204ENST00000439235 SUPT20HQ8NEM7 779 aa25.25■■□□□ 1.63
CHD3-204ENST00000439235 EYA3Q99504 573 aa25.25■■□□□ 1.63
CHD3-204ENST00000439235 GNL3LQ9NVN8 582 aaKnown RBP25.25■■□□□ 1.63
CHD3-204ENST00000439235 DUOX1Q9NRD9 1551 aa25.25■■□□□ 1.63
CHD3-204ENST00000439235 SNED1Q8TER0 1413 aa25.24■■□□□ 1.63
CHD3-204ENST00000439235 IRS2Q9Y4H2 1338 aa25.24■■□□□ 1.63
CHD3-204ENST00000439235 GSPT1P15170 499 aaKnown RBP25.24■■□□□ 1.63
CHD3-204ENST00000439235 ARID4AP29374 1257 aaPredicted RBP25.24■■□□□ 1.63
CHD3-204ENST00000439235 PHKA1P46020 1223 aa25.24■■□□□ 1.63
CHD3-204ENST00000439235 POLLQ9UGP5 575 aa25.24■■□□□ 1.63
CHD3-204ENST00000439235 WTIPA6NIX2 430 aaPredicted RBP25.23■■□□□ 1.63
CHD3-204ENST00000439235 KLRK1P26718 216 aa25.23■■□□□ 1.63
CHD3-204ENST00000439235 GYG1P46976 350 aa25.23■■□□□ 1.63
CHD3-204ENST00000439235 ZNF804AQ7Z570 1209 aa25.23■■□□□ 1.63
CHD3-204ENST00000439235 RTFDC1Q9BY42 306 aaPredicted RBP25.23■■□□□ 1.63
CHD3-204ENST00000439235 BOLA2Q9H3K6 86 aa25.23■■□□□ 1.63
CHD3-204ENST00000439235 HIBADHP31937 336 aaKnown RBP25.22■■□□□ 1.63
CHD3-204ENST00000439235 BCAMP50895 628 aa25.22■■□□□ 1.63
CHD3-204ENST00000439235 FAM84BQ96KN1 310 aaPredicted RBP25.22■■□□□ 1.63
CHD3-204ENST00000439235 BCS1LQ9Y276 419 aa25.22■■□□□ 1.63
CHD3-204ENST00000439235 FBXO33Q7Z6M2 555 aa25.21■■□□□ 1.63
CHD3-204ENST00000439235 HAUS7Q99871 368 aa25.21■■□□□ 1.63
CHD3-204ENST00000439235 SEMA3EO15041 775 aa25.2■■□□□ 1.62
CHD3-204ENST00000439235 CNTROBQ8N137 903 aa25.2■■□□□ 1.62
CHD3-204ENST00000439235 GPR101Q96P66 508 aaPredicted RBP25.2■■□□□ 1.62
CHD3-204ENST00000439235 PSMD1Q99460 953 aa25.2■■□□□ 1.62
CHD3-204ENST00000439235 SYT17Q9BSW7 474 aa25.2■■□□□ 1.62
CHD3-204ENST00000439235 ZC3H12CQ9C0D7 883 aaKnown RBP25.2■■□□□ 1.62
CHD3-204ENST00000439235 WWC3Q9ULE0 1092 aa25.2■■□□□ 1.62
CHD3-204ENST00000439235 TRIM6-TRIM34B2RNG4 842 aa25.19■■□□□ 1.62
CHD3-204ENST00000439235 ZBTB22O15209 634 aa25.19■■□□□ 1.62
CHD3-204ENST00000439235 WASHC4Q2M389 1173 aa25.19■■□□□ 1.62
CHD3-204ENST00000439235 SDSP20132 328 aa25.18■■□□□ 1.62
CHD3-204ENST00000439235 TXNRD3Q86VQ6 643 aa25.18■■□□□ 1.62
CHD3-204ENST00000439235 DNAJC2Q99543 621 aaKnown RBP25.18■■□□□ 1.62
CHD3-204ENST00000439235 MCAMP43121 646 aa25.17■■□□□ 1.62
CHD3-204ENST00000439235 FKBP4Q02790 459 aaKnown RBP eCLIP25.17■■□□□ 1.62
CHD3-204ENST00000439235 RASGRF1Q13972 1273 aa25.17■■□□□ 1.62
CHD3-204ENST00000439235 RILPL2Q969X0 211 aa25.17■■□□□ 1.62
CHD3-204ENST00000439235 EVI5LQ96CN4 794 aa25.17■■□□□ 1.62
CHD3-204ENST00000439235 DENND2AQ9ULE3 1009 aa25.17■■□□□ 1.62
CHD3-204ENST00000439235 FRAT2O75474 233 aaPredicted RBP25.16■■□□□ 1.62
CHD3-204ENST00000439235 SCARF1Q14162 830 aa25.16■■□□□ 1.62
CHD3-204ENST00000439235 SPATA5Q8NB90 893 aa25.16■■□□□ 1.62
CHD3-204ENST00000439235 COA1Q9GZY4 146 aa25.16■■□□□ 1.62
CHD3-204ENST00000439235 PDS5AQ29RF7 1337 aaKnown RBP25.15■■□□□ 1.62
CHD3-204ENST00000439235 DCAF8L1A6NGE4 600 aa25.15■■□□□ 1.62
CHD3-204ENST00000439235 RIMBP2O15034 1052 aa25.15■■□□□ 1.62
CHD3-204ENST00000439235 MAP4K4O95819 1239 aaPredicted RBP25.15■■□□□ 1.62
CHD3-204ENST00000439235 VPS33BQ9H267 617 aa25.15■■□□□ 1.62
CHD3-204ENST00000439235 PAG1Q9NWQ8 432 aa25.15■■□□□ 1.62
CHD3-204ENST00000439235 HMG20BQ9P0W2 317 aa25.15■■□□□ 1.62
CHD3-204ENST00000439235 ARFGEF1Q9Y6D6 1849 aa25.14■■□□□ 1.62
CHD3-204ENST00000439235 G3V3G9 751 aa25.14■■□□□ 1.62
CHD3-204ENST00000439235 ZAP70P43403 619 aa25.14■■□□□ 1.62
CHD3-204ENST00000439235 KIAA2012Q0VF49 1180 aa25.14■■□□□ 1.62
CHD3-204ENST00000439235 TTF1Q15361 905 aaPredicted RBP25.14■■□□□ 1.62
CHD3-204ENST00000439235 DCAF8Q5TAQ9 597 aa25.14■■□□□ 1.62
CHD3-204ENST00000439235 TDRD7Q8NHU6 1098 aaKnown RBP25.14■■□□□ 1.62
CHD3-204ENST00000439235 CD209Q9NNX6 404 aa25.14■■□□□ 1.62
CHD3-204ENST00000439235 SNRKQ9NRH2 765 aa25.14■■□□□ 1.62
CHD3-204ENST00000439235 GOLIM4O00461 696 aa25.13■■□□□ 1.61
CHD3-204ENST00000439235 IL1R1P14778 569 aa25.13■■□□□ 1.61
CHD3-204ENST00000439235 TAOK3Q9H2K8 898 aa25.13■■□□□ 1.61
CHD3-204ENST00000439235 IQSEC3Q9UPP2 1182 aaPredicted RBP25.13■■□□□ 1.61
CHD3-204ENST00000439235 LTBP3Q9NS15 1303 aa25.12■■□□□ 1.61
CHD3-204ENST00000439235 PPIP5K2O43314 1243 aa25.12■■□□□ 1.61
CHD3-204ENST00000439235 CDC45O75419 566 aa25.12■■□□□ 1.61
CHD3-204ENST00000439235 PI16Q6UXB8 463 aa25.12■■□□□ 1.61
CHD3-204ENST00000439235 NDUFB9Q9Y6M9 179 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms