RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SUPT20HQ8NEM7 779 aa15.47■□□□□ 0.07
USP40-205ENST00000430158 TMX4Q9H1E5 349 aaPredicted RBP15.47■□□□□ 0.07
USP40-205ENST00000430158 ANKIB1Q9P2G1 1089 aa15.47■□□□□ 0.07
USP40-205ENST00000430158 GGA1Q9UJY5 639 aa15.47■□□□□ 0.07
USP40-205ENST00000430158 LEMD3Q9Y2U8 911 aa15.47■□□□□ 0.07
USP40-205ENST00000430158 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.47■□□□□ 0.07
USP40-205ENST00000430158 UFL1O94874 794 aa15.46■□□□□ 0.07
USP40-205ENST00000430158 FGFR2P21802 821 aa15.46■□□□□ 0.07
USP40-205ENST00000430158 KLRK1P26718 216 aa15.46■□□□□ 0.07
USP40-205ENST00000430158 AOC3Q16853 763 aa15.46■□□□□ 0.07
USP40-205ENST00000430158 EXOC6Q8TAG9 804 aa15.46■□□□□ 0.07
USP40-205ENST00000430158 RNF181Q9P0P0 153 aa15.46■□□□□ 0.07
USP40-205ENST00000430158 TIAM2Q8IVF5 1701 aa15.46■□□□□ 0.06
USP40-205ENST00000430158 ZNF804BA4D1E1 1349 aa15.45■□□□□ 0.06
USP40-205ENST00000430158 C6orf229H3BNL8 230 aa15.45■□□□□ 0.06
USP40-205ENST00000430158 SASH1O94885 1247 aa15.45■□□□□ 0.06
USP40-205ENST00000430158 PDE8BO95263 885 aa15.45■□□□□ 0.06
USP40-205ENST00000430158 POTEIP0CG38 1075 aa15.45■□□□□ 0.06
USP40-205ENST00000430158 IL15P40933 162 aaPredicted RBP15.45■□□□□ 0.06
USP40-205ENST00000430158 SIL1Q9H173 461 aa15.45■□□□□ 0.06
USP40-205ENST00000430158 FZD9O00144 591 aa15.44■□□□□ 0.06
USP40-205ENST00000430158 PPIP5K2O43314 1243 aa15.44■□□□□ 0.06
USP40-205ENST00000430158 UBE4AQ14139 1066 aa15.44■□□□□ 0.06
USP40-205ENST00000430158 WASHC4Q2M389 1173 aa15.44■□□□□ 0.06
USP40-205ENST00000430158 MED23Q9ULK4 1368 aa15.44■□□□□ 0.06
USP40-205ENST00000430158 ZC3H4Q9UPT8 1303 aaKnown RBP15.43■□□□□ 0.06
USP40-205ENST00000430158 ZNF646O15015 1829 aaPredicted RBP15.43■□□□□ 0.06
USP40-205ENST00000430158 PSME4Q14997 1843 aa15.43■□□□□ 0.06
USP40-205ENST00000430158 YDJCA8MPS7 323 aa15.43■□□□□ 0.06
USP40-205ENST00000430158 AAMPQ13685 434 aa15.43■□□□□ 0.06
USP40-205ENST00000430158 METTL24Q5JXM2 366 aa15.43■□□□□ 0.06
USP40-205ENST00000430158 LARGE2Q8N3Y3 721 aa15.43■□□□□ 0.06
USP40-205ENST00000430158 EYA3Q99504 573 aa15.43■□□□□ 0.06
USP40-205ENST00000430158 RIMBP2O15034 1052 aa15.42■□□□□ 0.06
USP40-205ENST00000430158 SURF6O75683 361 aaKnown RBP15.41■□□□□ 0.06
USP40-205ENST00000430158 IRX6P78412 446 aaPredicted RBP15.41■□□□□ 0.06
USP40-205ENST00000430158 TFCP2Q12800 502 aa15.41■□□□□ 0.06
USP40-205ENST00000430158 ZC3H12CQ9C0D7 883 aaKnown RBP15.41■□□□□ 0.06
USP40-205ENST00000430158 CEP126Q9P2H0 1117 aa15.41■□□□□ 0.06
USP40-205ENST00000430158 ZNRF3Q9ULT6 936 aa15.41■□□□□ 0.06
USP40-205ENST00000430158 ZNF541Q9H0D2 1346 aa15.41■□□□□ 0.06
USP40-205ENST00000430158 ARAP2Q8WZ64 1704 aa15.4■□□□□ 0.06
USP40-205ENST00000430158 G3BP1Q13283 466 aaKnown RBP eCLIP15.4■□□□□ 0.06
USP40-205ENST00000430158 PUM3Q15397 648 aaKnown RBP15.4■□□□□ 0.06
USP40-205ENST00000430158 DOK7Q18PE1 504 aa15.4■□□□□ 0.06
USP40-205ENST00000430158 FBXO33Q7Z6M2 555 aa15.4■□□□□ 0.06
USP40-205ENST00000430158 FAM84BQ96KN1 310 aaPredicted RBP15.4■□□□□ 0.06
USP40-205ENST00000430158 DCTPP1Q9H773 170 aa15.4■□□□□ 0.06
USP40-205ENST00000430158 KCNQ5Q9NR82 932 aa15.4■□□□□ 0.06
USP40-205ENST00000430158 EXOC6BQ9Y2D4 811 aa15.4■□□□□ 0.06
USP40-205ENST00000430158 ECE2O60344 883 aa15.39■□□□□ 0.05
USP40-205ENST00000430158 HMMRO75330 724 aa15.39■□□□□ 0.05
USP40-205ENST00000430158 CD44P16070 742 aaKnown RBP15.39■□□□□ 0.05
USP40-205ENST00000430158 CXCL9Q07325 125 aa15.39■□□□□ 0.05
USP40-205ENST00000430158 NIM1KQ8IY84 436 aa15.39■□□□□ 0.05
USP40-205ENST00000430158 JDP2Q8WYK2 163 aa15.39■□□□□ 0.05
USP40-205ENST00000430158 DBNDD1Q9H9R9 158 aa15.39■□□□□ 0.05
USP40-205ENST00000430158 GPR108Q9NPR9 543 aa15.39■□□□□ 0.05
USP40-205ENST00000430158 FARP1Q9Y4F1 1045 aaPredicted RBP15.39■□□□□ 0.05
USP40-205ENST00000430158 IL1R1P14778 569 aa15.38■□□□□ 0.05
USP40-205ENST00000430158 HDAC1Q13547 482 aaPredicted RBP15.38■□□□□ 0.05
USP40-205ENST00000430158 ATP2B3Q16720 1220 aa15.38■□□□□ 0.05
USP40-205ENST00000430158 LPIN2Q92539 896 aa15.38■□□□□ 0.05
USP40-205ENST00000430158 COA1Q9GZY4 146 aa15.38■□□□□ 0.05
USP40-205ENST00000430158 CD209Q9NNX6 404 aa15.38■□□□□ 0.05
USP40-205ENST00000430158 ZNF609O15014 1411 aa15.37■□□□□ 0.05
USP40-205ENST00000430158 GLTPD2A6NH11 291 aa15.37■□□□□ 0.05
USP40-205ENST00000430158 CENPBP07199 599 aaPredicted RBP15.37■□□□□ 0.05
USP40-205ENST00000430158 GYG1P46976 350 aa15.37■□□□□ 0.05
USP40-205ENST00000430158 KCNJ4P48050 445 aa15.37■□□□□ 0.05
USP40-205ENST00000430158 TIMM10P62072 90 aa15.37■□□□□ 0.05
USP40-205ENST00000430158 PODNQ7Z5L7 613 aa15.37■□□□□ 0.05
USP40-205ENST00000430158 TDRD7Q8NHU6 1098 aaKnown RBP15.37■□□□□ 0.05
USP40-205ENST00000430158 POTECB2RU33 542 aa15.36■□□□□ 0.05
USP40-205ENST00000430158 YY1P25490 414 aa15.36■□□□□ 0.05
USP40-205ENST00000430158 ADORA1P30542 326 aa15.36■□□□□ 0.05
USP40-205ENST00000430158 BCAMP50895 628 aa15.36■□□□□ 0.05
USP40-205ENST00000430158 RHPN1Q8TCX5 695 aa15.36■□□□□ 0.05
USP40-205ENST00000430158 WDR90Q96KV7 1748 aa15.36■□□□□ 0.05
USP40-205ENST00000430158 A0A1B0GUL7 405 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 RAB11FIP3O75154 756 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 DDNO94850 711 aaPredicted RBP15.35■□□□□ 0.05
USP40-205ENST00000430158 VIL1P09327 827 aaKnown RBP15.35■□□□□ 0.05
USP40-205ENST00000430158 SLC5A1P13866 664 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 HIBADHP31937 336 aaKnown RBP15.35■□□□□ 0.05
USP40-205ENST00000430158 HSP90AB4PQ58FF6 505 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 TNNI3KQ59H18 835 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 EAF2Q96CJ1 260 aaPredicted RBP15.35■□□□□ 0.05
USP40-205ENST00000430158 L3MBTL3Q96JM7 780 aaPredicted RBP15.35■□□□□ 0.05
USP40-205ENST00000430158 GMLQ99445 158 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 AKAP2Q9Y2D5 859 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 FPGT-TNNI3KV9GXZ4 949 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 AKAP11Q9UKA4 1901 aa15.35■□□□□ 0.05
USP40-205ENST00000430158 PSMD14O00487 310 aa15.34■□□□□ 0.05
USP40-205ENST00000430158 RAD17O75943 681 aa15.34■□□□□ 0.05
USP40-205ENST00000430158 IGHDP01880 384 aa15.34■□□□□ 0.05
USP40-205ENST00000430158 IFIT1P09914 478 aaKnown RBP15.34■□□□□ 0.05
USP40-205ENST00000430158 EIF6P56537 245 aaKnown RBP15.34■□□□□ 0.05
USP40-205ENST00000430158 ERC1Q8IUD2 1116 aa15.34■□□□□ 0.05
USP40-205ENST00000430158 GPC2Q8N158 579 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms