RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 EAPPQ56P03 285 aaPredicted RBP23.25■■□□□ 1.31
SHH-202ENST00000430104 EPHX2P34913 555 aa23.24■■□□□ 1.31
SHH-202ENST00000430104 EPS15P42566 896 aa23.24■■□□□ 1.31
SHH-202ENST00000430104 C20orf194Q5TEA3 1177 aa23.24■■□□□ 1.31
SHH-202ENST00000430104 PODNQ7Z5L7 613 aa23.24■■□□□ 1.31
SHH-202ENST00000430104 COA1Q9GZY4 146 aa23.24■■□□□ 1.31
SHH-202ENST00000430104 PSME4Q14997 1843 aa23.24■■□□□ 1.31
SHH-202ENST00000430104 POTEIP0CG38 1075 aa23.23■■□□□ 1.31
SHH-202ENST00000430104 POTEJP0CG39 1038 aa23.23■■□□□ 1.31
SHH-202ENST00000430104 UBE4AQ14139 1066 aa23.23■■□□□ 1.31
SHH-202ENST00000430104 MVPQ14764 893 aaKnown RBP23.23■■□□□ 1.31
SHH-202ENST00000430104 RBM46Q8TBY0 533 aaKnown RBP23.23■■□□□ 1.31
SHH-202ENST00000430104 PNMA6EA0A0J9YXQ4 647 aa23.22■■□□□ 1.31
SHH-202ENST00000430104 PDE8BO95263 885 aa23.22■■□□□ 1.31
SHH-202ENST00000430104 MTX1Q13505 466 aa23.22■■□□□ 1.31
SHH-202ENST00000430104 ATG9AQ7Z3C6 839 aa23.22■■□□□ 1.31
SHH-202ENST00000430104 GPRC5DQ9NZD1 345 aa23.22■■□□□ 1.31
SHH-202ENST00000430104 CLEC11AQ9Y240 323 aa23.22■■□□□ 1.31
SHH-202ENST00000430104 ZNF804AQ7Z570 1209 aa23.21■■□□□ 1.31
SHH-202ENST00000430104 CD209Q9NNX6 404 aa23.21■■□□□ 1.31
SHH-202ENST00000430104 COPRSQ9NQ92 184 aa23.21■■□□□ 1.31
SHH-202ENST00000430104 IRS2Q9Y4H2 1338 aa23.21■■□□□ 1.31
SHH-202ENST00000430104 SHTN1A0MZ66 631 aa23.2■■□□□ 1.3
SHH-202ENST00000430104 USP17L3A6NCW0 530 aa23.2■■□□□ 1.3
SHH-202ENST00000430104 USP17L4A6NCW7 530 aa23.2■■□□□ 1.3
SHH-202ENST00000430104 CIAO1O76071 339 aa23.2■■□□□ 1.3
SHH-202ENST00000430104 VIL1P09327 827 aaKnown RBP23.2■■□□□ 1.3
SHH-202ENST00000430104 GYG1P46976 350 aa23.2■■□□□ 1.3
SHH-202ENST00000430104 C15orf52Q6ZUT6 534 aaKnown RBP23.2■■□□□ 1.3
SHH-202ENST00000430104 USP17L1Q7RTZ2 530 aa23.2■■□□□ 1.3
SHH-202ENST00000430104 VGLL2Q8N8G2 317 aa23.2■■□□□ 1.3
SHH-202ENST00000430104 CNOT7Q9UIV1 285 aaKnown RBP23.2■■□□□ 1.3
SHH-202ENST00000430104 ATP8B2P98198 1209 aa23.19■■□□□ 1.3
SHH-202ENST00000430104 SMC1BQ8NDV3 1235 aa23.19■■□□□ 1.3
SHH-202ENST00000430104 MXD3Q9BW11 206 aa23.19■■□□□ 1.3
SHH-202ENST00000430104 CEP126Q9P2H0 1117 aa23.19■■□□□ 1.3
SHH-202ENST00000430104 FBXO3Q9UK99 471 aa23.19■■□□□ 1.3
SHH-202ENST00000430104 DDX19BQ9UMR2 479 aa23.19■■□□□ 1.3
SHH-202ENST00000430104 IL15P40933 162 aaPredicted RBP23.18■■□□□ 1.3
SHH-202ENST00000430104 GTF2IP78347 998 aa23.18■■□□□ 1.3
SHH-202ENST00000430104 PDE3AQ14432 1141 aa23.18■■□□□ 1.3
SHH-202ENST00000430104 RSBN1LQ6PCB5 846 aaPredicted RBP23.18■■□□□ 1.3
SHH-202ENST00000430104 PNMA8AQ86V59 439 aaPredicted RBP23.18■■□□□ 1.3
SHH-202ENST00000430104 MICALL2Q8IY33 904 aa23.18■■□□□ 1.3
SHH-202ENST00000430104 H7C1D1 291 aa23.17■■□□□ 1.3
SHH-202ENST00000430104 PUM3Q15397 648 aaKnown RBP23.17■■□□□ 1.3
SHH-202ENST00000430104 TTLL5Q6EMB2 1281 aa23.17■■□□□ 1.3
SHH-202ENST00000430104 ADARB2Q9NS39 739 aaKnown RBP23.17■■□□□ 1.3
SHH-202ENST00000430104 IFIT1P09914 478 aaKnown RBP23.16■■□□□ 1.3
SHH-202ENST00000430104 RPS12P25398 132 aaKnown RBP23.16■■□□□ 1.3
SHH-202ENST00000430104 HIBADHP31937 336 aaKnown RBP23.16■■□□□ 1.3
SHH-202ENST00000430104 RBM26Q5T8P6 1007 aaKnown RBP23.16■■□□□ 1.3
SHH-202ENST00000430104 CHADLQ6NUI6 762 aa23.16■■□□□ 1.3
SHH-202ENST00000430104 LDHDQ86WU2 507 aa23.16■■□□□ 1.3
SHH-202ENST00000430104 VPS37DQ86XT2 251 aa23.16■■□□□ 1.3
SHH-202ENST00000430104 DPF2Q92785 391 aa23.16■■□□□ 1.3
SHH-202ENST00000430104 FAM84BQ96KN1 310 aaPredicted RBP23.16■■□□□ 1.3
SHH-202ENST00000430104 JAG2Q9Y219 1238 aa23.16■■□□□ 1.3
SHH-202ENST00000430104 ZNF646O15015 1829 aaPredicted RBP23.16■■□□□ 1.3
SHH-202ENST00000430104 SLC5A1P13866 664 aa23.15■■□□□ 1.3
SHH-202ENST00000430104 FSTL1Q12841 308 aa23.15■■□□□ 1.3
SHH-202ENST00000430104 G3BP1Q13283 466 aaKnown RBP eCLIP23.15■■□□□ 1.3
SHH-202ENST00000430104 CAVIN4Q5BKX8 364 aa23.15■■□□□ 1.3
SHH-202ENST00000430104 DACT2Q5SW24 774 aa23.15■■□□□ 1.3
SHH-202ENST00000430104 USP50Q70EL3 339 aaPredicted RBP23.15■■□□□ 1.3
SHH-202ENST00000430104 IL1R1P14778 569 aa23.14■■□□□ 1.29
SHH-202ENST00000430104 FGFR2P21802 821 aa23.14■■□□□ 1.29
SHH-202ENST00000430104 RRP1P56182 461 aaKnown RBP23.14■■□□□ 1.29
SHH-202ENST00000430104 POLA2Q14181 598 aa23.14■■□□□ 1.29
SHH-202ENST00000430104 ATP2B3Q16720 1220 aa23.14■■□□□ 1.29
SHH-202ENST00000430104 STRIP1Q5VSL9 837 aa23.14■■□□□ 1.29
SHH-202ENST00000430104 CEP85Q6P2H3 762 aa23.14■■□□□ 1.29
SHH-202ENST00000430104 SAMD7Q7Z3H4 446 aa23.14■■□□□ 1.29
SHH-202ENST00000430104 IQSEC3Q9UPP2 1182 aaPredicted RBP23.14■■□□□ 1.29
SHH-202ENST00000430104 BCAMP50895 628 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 TFCP2Q12800 502 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 TBC1D10BQ4KMP7 808 aaPredicted RBP23.13■■□□□ 1.29
SHH-202ENST00000430104 AGBL3Q8NEM8 1001 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 TRPM4Q8TD43 1214 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 SSH3Q8TE77 659 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 LPIN2Q92539 896 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 CHMP4BQ9H444 224 aaKnown RBP23.13■■□□□ 1.29
SHH-202ENST00000430104 ZBTB40Q9NUA8 1239 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 ADAMTSL1Q8N6G6 1762 aa23.13■■□□□ 1.29
SHH-202ENST00000430104 FRAT2O75474 233 aaPredicted RBP23.12■■□□□ 1.29
SHH-202ENST00000430104 SURF6O75683 361 aaKnown RBP23.12■■□□□ 1.29
SHH-202ENST00000430104 OS9Q13438 667 aaPredicted RBP23.12■■□□□ 1.29
SHH-202ENST00000430104 MAP1SQ66K74 1059 aaPredicted RBP23.12■■□□□ 1.29
SHH-202ENST00000430104 FBXO33Q7Z6M2 555 aa23.12■■□□□ 1.29
SHH-202ENST00000430104 TDRD7Q8NHU6 1098 aaKnown RBP23.11■■□□□ 1.29
SHH-202ENST00000430104 GMLQ99445 158 aa23.11■■□□□ 1.29
SHH-202ENST00000430104 EGFRP00533 1210 aa23.1■■□□□ 1.29
SHH-202ENST00000430104 USP17L8P0C7I0 530 aa23.1■■□□□ 1.29
SHH-202ENST00000430104 HIRAP54198 1017 aaPredicted RBP23.1■■□□□ 1.29
SHH-202ENST00000430104 TIMM10P62072 90 aa23.1■■□□□ 1.29
SHH-202ENST00000430104 MYH13Q9UKX3 1938 aa23.1■■□□□ 1.29
SHH-202ENST00000430104 MYO3BQ8WXR4 1341 aa23.09■■□□□ 1.29
SHH-202ENST00000430104 SASH1O94885 1247 aa23.09■■□□□ 1.29
SHH-202ENST00000430104 CHAF1AQ13111 956 aaPredicted RBP23.09■■□□□ 1.29
SHH-202ENST00000430104 KIAA0825Q8IV33 1275 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms