RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 RGS3P49796 1198 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 NLGN2Q8NFZ4 835 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 XAGE2Q96GT9 111 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 ECHDC1Q9NTX5 307 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 ZNF609O15014 1411 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 A0A1B0GUL6 1792 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 GPR162Q16538 588 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 VGLL2Q8N8G2 317 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 TBC1D16Q8TBP0 767 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 EAF2Q96CJ1 260 aaPredicted RBP12.33□□□□□ -0.44
CD44-207ENST00000425428 WWC3Q9ULE0 1092 aa12.33□□□□□ -0.44
CD44-207ENST00000425428 CHD4Q14839 1912 aa12.32□□□□□ -0.44
CD44-207ENST00000425428 GLRX3O76003 335 aaKnown RBP12.32□□□□□ -0.44
CD44-207ENST00000425428 HIBADHP31937 336 aaKnown RBP12.32□□□□□ -0.44
CD44-207ENST00000425428 LRRFIP1Q32MZ4 808 aaKnown RBP12.32□□□□□ -0.44
CD44-207ENST00000425428 PSMD1Q99460 953 aa12.32□□□□□ -0.44
CD44-207ENST00000425428 TAOK3Q9H2K8 898 aa12.32□□□□□ -0.44
CD44-207ENST00000425428 MYH13Q9UKX3 1938 aa12.32□□□□□ -0.44
CD44-207ENST00000425428 KIAA1551Q9HCM1 1747 aa12.32□□□□□ -0.44
CD44-207ENST00000425428 FKBP4Q02790 459 aaKnown RBP eCLIP12.31□□□□□ -0.44
CD44-207ENST00000425428 ARHGAP27Q6ZUM4 889 aa12.31□□□□□ -0.44
CD44-207ENST00000425428 AOX1Q06278 1338 aa12.31□□□□□ -0.44
CD44-207ENST00000425428 MED23Q9ULK4 1368 aa12.31□□□□□ -0.44
CD44-207ENST00000425428 RIMBP2O15034 1052 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 SEMA3EO15041 775 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 PPIP5K2O43314 1243 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 GRIN3BO60391 1043 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 FGFR2P21802 821 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 C7orf43Q8WVR3 580 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 JDP2Q8WYK2 163 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 DBNDD2Q9BQY9 259 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 ARAP2Q8WZ64 1704 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 TRIM6-TRIM34B2RNG4 842 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 PDE1AP54750 535 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 CCDC102BQ68D86 513 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 C15orf52Q6ZUT6 534 aaKnown RBP12.3□□□□□ -0.44
CD44-207ENST00000425428 LARGE2Q8N3Y3 721 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 COA1Q9GZY4 146 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 POLLQ9UGP5 575 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 DBNLQ9UJU6 430 aaKnown RBP12.3□□□□□ -0.44
CD44-207ENST00000425428 DENND2AQ9ULE3 1009 aa12.3□□□□□ -0.44
CD44-207ENST00000425428 TTF1Q15361 905 aaPredicted RBP12.29□□□□□ -0.44
CD44-207ENST00000425428 CASC1Q6TDU7 716 aa12.29□□□□□ -0.44
CD44-207ENST00000425428 NIM1KQ8IY84 436 aa12.29□□□□□ -0.44
CD44-207ENST00000425428 C16orf71Q8IYS4 520 aaPredicted RBP12.29□□□□□ -0.44
CD44-207ENST00000425428 ZGPATQ8N5A5 531 aaKnown RBP12.29□□□□□ -0.44
CD44-207ENST00000425428 RTFDC1Q9BY42 306 aaPredicted RBP12.29□□□□□ -0.44
CD44-207ENST00000425428 AK9Q5TCS8 1911 aa12.29□□□□□ -0.44
CD44-207ENST00000425428 ATP5JP18859 108 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 GYG1P46976 350 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 PLEKHM2Q8IWE5 1019 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 CNTROBQ8N137 903 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.28□□□□□ -0.44
CD44-207ENST00000425428 ZNF512BQ96KM6 892 aaPredicted RBP12.28□□□□□ -0.44
CD44-207ENST00000425428 OSBPL3Q9H4L5 887 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 STAP2Q9UGK3 403 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 FER1L6Q2WGJ9 1857 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 EIF5BO60841 1220 aaKnown RBP12.28□□□□□ -0.44
CD44-207ENST00000425428 ADORA1P30542 326 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 BCAMP50895 628 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 OLFM4Q6UX06 510 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 PODNQ7Z5L7 613 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 FBXW7Q969H0 707 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 COL4A1P02462 1669 aa12.28□□□□□ -0.44
CD44-207ENST00000425428 LTBP3Q9NS15 1303 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 IARSP41252 1262 aaKnown RBP12.27□□□□□ -0.45
CD44-207ENST00000425428 KIAA2012Q0VF49 1180 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 SPTY2D1Q68D10 685 aaPredicted RBP12.27□□□□□ -0.45
CD44-207ENST00000425428 FBXO33Q7Z6M2 555 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 WDR66Q8TBY9 1149 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 TBC1D22AQ8WUA7 517 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 RILPL2Q969X0 211 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 FAM84BQ96KN1 310 aaPredicted RBP12.27□□□□□ -0.45
CD44-207ENST00000425428 DNAJC2Q99543 621 aaKnown RBP12.27□□□□□ -0.45
CD44-207ENST00000425428 BOLA2Q9H3K6 86 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 CCDC88AQ3V6T2 1871 aa12.27□□□□□ -0.45
CD44-207ENST00000425428 SNAP23O00161 211 aa12.26□□□□□ -0.45
CD44-207ENST00000425428 ARID4AP29374 1257 aaPredicted RBP12.26□□□□□ -0.45
CD44-207ENST00000425428 PHKA1P46020 1223 aa12.26□□□□□ -0.45
CD44-207ENST00000425428 AOC3Q16853 763 aa12.26□□□□□ -0.45
CD44-207ENST00000425428 ZSCAN25Q6NSZ9 544 aa12.26□□□□□ -0.45
CD44-207ENST00000425428 SPATA5Q8NB90 893 aa12.26□□□□□ -0.45
CD44-207ENST00000425428 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.26□□□□□ -0.45
CD44-207ENST00000425428 CD209Q9NNX6 404 aa12.26□□□□□ -0.45
CD44-207ENST00000425428 TLR7Q9NYK1 1049 aaKnown RBP12.26□□□□□ -0.45
CD44-207ENST00000425428 TTC22Q5TAA0 569 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 EVI5LQ96CN4 794 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 HAUS7Q99871 368 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 ZNF277Q9NRM2 450 aaPredicted RBP12.25□□□□□ -0.45
CD44-207ENST00000425428 LTBP1Q14766 1721 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 HIP1O00291 1037 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 ECE2O60344 883 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 LMNB1P20700 586 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 PDE4AP27815 886 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 EIF6P56537 245 aaKnown RBP12.25□□□□□ -0.45
CD44-207ENST00000425428 CHAF1AQ13111 956 aaPredicted RBP12.25□□□□□ -0.45
CD44-207ENST00000425428 DOK7Q18PE1 504 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 OTUD7AQ8TE49 926 aaPredicted RBP12.25□□□□□ -0.45
CD44-207ENST00000425428 GPR101Q96P66 508 aaPredicted RBP12.25□□□□□ -0.45
CD44-207ENST00000425428 PAG1Q9NWQ8 432 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms