RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 WNT10BO00744 389 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 PDE8AO60658 829 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 FKTNO75072 461 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 SREBF2Q12772 1141 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 DACT2Q5SW24 774 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 RIC3Q7Z5B4 369 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 ANKRD18AQ8IVF6 992 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 CCDC191Q8NCU4 936 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 GCC1Q96CN9 775 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 MYD88Q99836 296 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 MXD3Q9BW11 206 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 FOXD4L1Q9NU39 408 aa12.4□□□□□ -0.42
RFFL-203ENST00000413582 CENPFP49454 3210 aa12.39□□□□□ -0.43
RFFL-203ENST00000413582 WTIPA6NIX2 430 aaPredicted RBP12.39□□□□□ -0.43
RFFL-203ENST00000413582 NF2P35240 595 aa12.39□□□□□ -0.43
RFFL-203ENST00000413582 JARID2Q92833 1246 aaPredicted RBP12.39□□□□□ -0.43
RFFL-203ENST00000413582 PHAXQ9H814 394 aaKnown RBP12.39□□□□□ -0.43
RFFL-203ENST00000413582 MBIPQ9NS73 344 aa12.39□□□□□ -0.43
RFFL-203ENST00000413582 MYO3BQ8WXR4 1341 aa12.38□□□□□ -0.43
RFFL-203ENST00000413582 SASH1O94885 1247 aa12.38□□□□□ -0.43
RFFL-203ENST00000413582 CTSWP56202 376 aa12.38□□□□□ -0.43
RFFL-203ENST00000413582 PTPN12Q05209 780 aaKnown RBP12.38□□□□□ -0.43
RFFL-203ENST00000413582 CWC25Q9NXE8 425 aaPredicted RBP12.38□□□□□ -0.43
RFFL-203ENST00000413582 ECM29Q5VYK3 1845 aa12.38□□□□□ -0.43
RFFL-203ENST00000413582 COL1A1P02452 1464 aaPredicted RBP12.38□□□□□ -0.43
RFFL-203ENST00000413582 BRCA2P51587 3418 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 RALBP1Q15311 655 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 HABP4Q5JVS0 413 aaKnown RBP12.37□□□□□ -0.43
RFFL-203ENST00000413582 LDLRAD1Q5T700 205 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 STRIP1Q5VSL9 837 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 SPRYD7Q5W111 196 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 ARMC9Q7Z3E5 817 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 OGFOD1Q8N543 542 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 RUNDC1Q96C34 613 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 CDC5LQ99459 802 aaKnown RBP12.37□□□□□ -0.43
RFFL-203ENST00000413582 SSC5DA1L4H1 1573 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 CEP290O15078 2479 aa12.37□□□□□ -0.43
RFFL-203ENST00000413582 POTEFA5A3E0 1075 aa12.36□□□□□ -0.43
RFFL-203ENST00000413582 ZNF853P0CG23 659 aa12.36□□□□□ -0.43
RFFL-203ENST00000413582 PRKG1Q13976 671 aa12.36□□□□□ -0.43
RFFL-203ENST00000413582 APOBEC3FQ8IUX4 373 aaKnown RBP12.36□□□□□ -0.43
RFFL-203ENST00000413582 FBXW7Q969H0 707 aa12.36□□□□□ -0.43
RFFL-203ENST00000413582 ZBED3Q96IU2 234 aaPredicted RBP12.36□□□□□ -0.43
RFFL-203ENST00000413582 METTL22Q9BUU2 404 aaPredicted RBP12.36□□□□□ -0.43
RFFL-203ENST00000413582 COA1Q9GZY4 146 aa12.36□□□□□ -0.43
RFFL-203ENST00000413582 BSDC1Q9NW68 430 aaPredicted RBP12.36□□□□□ -0.43
RFFL-203ENST00000413582 MINPP1Q9UNW1 487 aa12.36□□□□□ -0.43
RFFL-203ENST00000413582 ALDH1A1P00352 501 aa12.35□□□□□ -0.43
RFFL-203ENST00000413582 MMP14P50281 582 aa12.35□□□□□ -0.43
RFFL-203ENST00000413582 CCT4P50991 539 aaKnown RBP12.35□□□□□ -0.43
RFFL-203ENST00000413582 OTOP1Q7RTM1 612 aa12.35□□□□□ -0.43
RFFL-203ENST00000413582 TXNRD3Q86VQ6 643 aa12.35□□□□□ -0.43
RFFL-203ENST00000413582 GREM2Q9H772 168 aa12.35□□□□□ -0.43
RFFL-203ENST00000413582 ANGEL1Q9UNK9 670 aaKnown RBP12.35□□□□□ -0.43
RFFL-203ENST00000413582 TRIM17Q9Y577 477 aa12.35□□□□□ -0.43
RFFL-203ENST00000413582 A0A1B0GUL6 1792 aa12.35□□□□□ -0.43
RFFL-203ENST00000413582 OTOFQ9HC10 1997 aa12.34□□□□□ -0.43
RFFL-203ENST00000413582 TRIOBPQ9H2D6 2365 aa12.34□□□□□ -0.43
RFFL-203ENST00000413582 MANSC4A6NHS7 340 aaPredicted RBP12.34□□□□□ -0.43
RFFL-203ENST00000413582 IGF2BP3O00425 579 aaKnown RBP eCLIP12.34□□□□□ -0.43
RFFL-203ENST00000413582 KLRK1P26718 216 aa12.34□□□□□ -0.43
RFFL-203ENST00000413582 IFNL1Q8IU54 200 aa12.34□□□□□ -0.43
RFFL-203ENST00000413582 KIAA0825Q8IV33 1275 aa12.34□□□□□ -0.43
RFFL-203ENST00000413582 TTLL11Q8NHH1 800 aa12.34□□□□□ -0.43
RFFL-203ENST00000413582 FZD1Q9UP38 647 aa12.34□□□□□ -0.43
RFFL-203ENST00000413582 MYBBP1AQ9BQG0 1328 aaKnown RBP12.34□□□□□ -0.43
RFFL-203ENST00000413582 ZNF316A6NFI3 1004 aaPredicted RBP12.33□□□□□ -0.44
RFFL-203ENST00000413582 IGKV5-2P06315 115 aa12.33□□□□□ -0.44
RFFL-203ENST00000413582 MAP3K11Q16584 847 aa12.33□□□□□ -0.44
RFFL-203ENST00000413582 INTS3Q68E01 1043 aaKnown RBP12.33□□□□□ -0.44
RFFL-203ENST00000413582 WNK4Q96J92 1243 aa12.33□□□□□ -0.44
RFFL-203ENST00000413582 ELL2O00472 640 aaPredicted RBP12.32□□□□□ -0.44
RFFL-203ENST00000413582 DDX58O95786 925 aaKnown RBP12.32□□□□□ -0.44
RFFL-203ENST00000413582 ZBTB48P10074 688 aaPredicted RBP12.32□□□□□ -0.44
RFFL-203ENST00000413582 INHBEP58166 350 aa12.32□□□□□ -0.44
RFFL-203ENST00000413582 WDR43Q15061 677 aaKnown RBP eCLIP12.32□□□□□ -0.44
RFFL-203ENST00000413582 TTLL5Q6EMB2 1281 aa12.32□□□□□ -0.44
RFFL-203ENST00000413582 CLMNQ96JQ2 1002 aa12.32□□□□□ -0.44
RFFL-203ENST00000413582 DEFB129Q9H1M3 183 aa12.32□□□□□ -0.44
RFFL-203ENST00000413582 IFT57Q9NWB7 429 aa12.32□□□□□ -0.44
RFFL-203ENST00000413582 MAP3K2Q9Y2U5 619 aa12.32□□□□□ -0.44
RFFL-203ENST00000413582 LEMD3Q9Y2U8 911 aa12.32□□□□□ -0.44
RFFL-203ENST00000413582 GTF2IP78347 998 aa12.31□□□□□ -0.44
RFFL-203ENST00000413582 C8orf58Q8NAV2 365 aa12.31□□□□□ -0.44
RFFL-203ENST00000413582 ARMC5Q96C12 935 aa12.31□□□□□ -0.44
RFFL-203ENST00000413582 ERO1AQ96HE7 468 aa12.31□□□□□ -0.44
RFFL-203ENST00000413582 ADAMTS8Q9UP79 889 aa12.31□□□□□ -0.44
RFFL-203ENST00000413582 PTPN22Q9Y2R2 807 aa12.31□□□□□ -0.44
RFFL-203ENST00000413582 ZNF804BA4D1E1 1349 aa12.31□□□□□ -0.44
RFFL-203ENST00000413582 GJA5P36382 358 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 IGHMBP2P38935 993 aaKnown RBP12.3□□□□□ -0.44
RFFL-203ENST00000413582 FXR1P51114 621 aaKnown RBP eCLIP12.3□□□□□ -0.44
RFFL-203ENST00000413582 CAP1Q01518 475 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 CRHR2Q13324 411 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 CERS5Q8N5B7 392 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 MTMR14Q8NCE2 650 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 CD99L2Q8TCZ2 262 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 SLC10A4Q96EP9 437 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 PPP2R3BQ9Y5P8 575 aa12.3□□□□□ -0.44
RFFL-203ENST00000413582 IRS2Q9Y4H2 1338 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms