RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 MAGEB6P1A0A0J9YX57 407 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 MMP10P09238 476 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 HLFQ16534 295 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 SUSD4Q5VX71 490 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 CCDC125Q86Z20 511 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 HELLSQ9NRZ9 838 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 DDX49Q9Y6V7 483 aaKnown RBP10.02□□□□□ -0.81
SYNE1-211ENST00000413186 IGKV5-2P06315 115 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 ANAPC15P60006 121 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 LARGE2Q8N3Y3 721 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 WASF1Q92558 559 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 SH2B1Q9NRF2 756 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-211ENST00000413186 TAF5LO75529 589 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 PDE8BO95263 885 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 MFSD6Q6ZSS7 791 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 SKAP1Q86WV1 359 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 SLC4A4Q9Y6R1 1079 aa10.02□□□□□ -0.81
SYNE1-211ENST00000413186 RANBP6O60518 1105 aaKnown RBP10.01□□□□□ -0.81
SYNE1-211ENST00000413186 NUP133Q8WUM0 1156 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 CNNM2Q9H8M5 875 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 AKAP12Q02952 1782 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 SAMD1Q6SPF0 538 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-211ENST00000413186 NCOA7Q8NI08 942 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 TCEAL9Q9UHQ7 104 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 XDHP47989 1333 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 NPR1P16066 1061 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 EN1Q05925 392 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-211ENST00000413186 MTX1Q13505 466 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 KBTBD3Q8NAB2 608 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 KRT23Q9C075 422 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 CABP5Q9NP86 173 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 CAMTA1Q9Y6Y1 1673 aa10.01□□□□□ -0.81
SYNE1-211ENST00000413186 NMIQ13287 307 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-211ENST00000413186 MPHOSPH10O00566 681 aaKnown RBP10□□□□□ -0.81
SYNE1-211ENST00000413186 EIF6P56537 245 aaKnown RBP10□□□□□ -0.81
SYNE1-211ENST00000413186 CHRNDQ07001 517 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 PDE4CQ08493 712 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 MAGEB6Q8N7X4 407 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 NIM1KQ8IY84 436 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 TTLL11Q8NHH1 800 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 CTCFLQ8NI51 663 aaPredicted RBP10□□□□□ -0.81
SYNE1-211ENST00000413186 GZF1Q9H116 711 aaPredicted RBP10□□□□□ -0.81
SYNE1-211ENST00000413186 SEMA3EO15041 775 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 CHMLP26374 656 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 APPBP2Q92624 585 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 F8W031 263 aaPredicted RBP10□□□□□ -0.81
SYNE1-211ENST00000413186 IFIT3O14879 490 aaKnown RBP10□□□□□ -0.81
SYNE1-211ENST00000413186 SPATA5Q8NB90 893 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 NEK1Q96PY6 1258 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 PIK3C2AO00443 1686 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 NFAT5O94916 1531 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 ABCC6O95255 1503 aa10□□□□□ -0.81
SYNE1-211ENST00000413186 PPEF1O14829 653 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 GRAPQ13588 217 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 TMTC2Q8N394 836 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 GRAPLQ8TC17 118 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 EAF2Q96CJ1 260 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 UPF3BQ9BZI7 483 aaKnown RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 KDM6AO15550 1401 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 ADCY9O60503 1353 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 CCDC171Q6TFL3 1326 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 LMOD1P29536 600 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 CCAR1Q8IX12 1150 aaKnown RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 ESR2Q92731 530 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 RBM8AQ9Y5S9 174 aaKnown RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 ZNF804BA4D1E1 1349 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 TSPY2A6NKD2 308 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 PPIP5K2O43314 1243 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 MCM5P33992 734 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 POLA2Q14181 598 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 LRRC24Q50LG9 513 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 PHLPP1O60346 1717 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 WDHD1O75717 1129 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-211ENST00000413186 TNNI2P48788 182 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 KIAA2012Q0VF49 1180 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 STK3Q13188 491 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 ITPK1Q13572 414 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 GRIPAP1Q4V328 841 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 LINC00116Q8NCU8 138 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 SLC16A10Q8TF71 515 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 MASTLQ96GX5 879 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 LIMCH1Q9UPQ0 1083 aa9.99□□□□□ -0.81
SYNE1-211ENST00000413186 TPM4P67936 248 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 BCS1LQ9Y276 419 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 BCL9O00512 1426 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 WDR33Q9C0J8 1336 aaKnown RBP9.98□□□□□ -0.81
SYNE1-211ENST00000413186 PTPN12Q05209 780 aaKnown RBP9.98□□□□□ -0.81
SYNE1-211ENST00000413186 CATIPQ7Z7H3 387 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 TTC6Q86TZ1 520 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 BSDC1Q9NW68 430 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-211ENST00000413186 SLC12A7Q9Y666 1083 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 EPB41L2O43491 1005 aaKnown RBP9.98□□□□□ -0.81
SYNE1-211ENST00000413186 TBC1D9BQ66K14 1250 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 ZNF396Q96N95 335 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-211ENST00000413186 PXDNLA1KZ92 1463 aa9.98□□□□□ -0.81
SYNE1-211ENST00000413186 OTUD7AQ8TE49 926 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-211ENST00000413186 HOOK1Q9UJC3 728 aaKnown RBP9.98□□□□□ -0.81
SYNE1-211ENST00000413186 CAMTA2O94983 1202 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 MBD3O95983 291 aa9.97□□□□□ -0.81
SYNE1-211ENST00000413186 HMGN5P82970 282 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms