RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 CEP57L1Q8IYX8 460 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 ALG1Q9BT22 464 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 GREM2Q9H772 168 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 DBNLQ9UJU6 430 aaKnown RBP13□□□□□ -0.33
PTPRF-204ENST00000412568 EPHA10Q5JZY3 1008 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 LRSAM1Q6UWE0 723 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 RASEFQ8IZ41 740 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 WASF1Q92558 559 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 CPS1P31327 1500 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 CPSF1Q10570 1443 aaKnown RBP12.99□□□□□ -0.33
PTPRF-204ENST00000412568 KIF24Q5T7B8 1368 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 LOC102724428A0A0B4J2F2 783 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 SIK1P57059 783 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 ST5P78524 1137 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 CCDC96Q2M329 555 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 PI16Q6UXB8 463 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 MYL10Q9BUA6 226 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 DNAJC5Q9H3Z4 198 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 ADAMTS13Q76LX8 1427 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 IPO7O95373 1038 aaKnown RBP12.99□□□□□ -0.33
PTPRF-204ENST00000412568 ADORA1P30542 326 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 HSP90AA4PQ58FG1 418 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 MCM9Q9NXL9 1143 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 DACT1Q9NYF0 836 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPRF-204ENST00000412568 PTPDC1A2A3K4 754 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 SNAP23O00161 211 aa12.99□□□□□ -0.33
PTPRF-204ENST00000412568 CCAR1Q8IX12 1150 aaKnown RBP12.99□□□□□ -0.33
PTPRF-204ENST00000412568 KRT18P05783 430 aaKnown RBP12.98□□□□□ -0.33
PTPRF-204ENST00000412568 INTS4Q96HW7 963 aaKnown RBP12.98□□□□□ -0.33
PTPRF-204ENST00000412568 MAGEB6P1A0A0J9YX57 407 aa12.98□□□□□ -0.33
PTPRF-204ENST00000412568 BAG3O95817 575 aa12.98□□□□□ -0.33
PTPRF-204ENST00000412568 CRNKL1Q9BZJ0 848 aaKnown RBP12.98□□□□□ -0.33
PTPRF-204ENST00000412568 JAK2O60674 1132 aa12.98□□□□□ -0.33
PTPRF-204ENST00000412568 IGKV5-2P06315 115 aa12.98□□□□□ -0.33
PTPRF-204ENST00000412568 SLFNL1Q499Z3 407 aa12.98□□□□□ -0.33
PTPRF-204ENST00000412568 HSPA4P34932 840 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 ADCK5Q3MIX3 580 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 CNBD1Q8NA66 436 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 ANTXR1Q9H6X2 564 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 LRRC7Q96NW7 1537 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 PUM3Q15397 648 aaKnown RBP12.97□□□□□ -0.33
PTPRF-204ENST00000412568 UQCRHLA0A096LP55 91 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 UQCRHP07919 91 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 PDE4BQ07343 736 aa12.97□□□□□ -0.33
PTPRF-204ENST00000412568 ADCY5O95622 1261 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 ATP5JP18859 108 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 RPS6KB1P23443 525 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 IFIT1BQ5T764 474 aaKnown RBP12.96□□□□□ -0.33
PTPRF-204ENST00000412568 ESR2Q92731 530 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 ZNF830Q96NB3 372 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-204ENST00000412568 ZC3H12CQ9C0D7 883 aaKnown RBP12.96□□□□□ -0.33
PTPRF-204ENST00000412568 PIK3C2BO00750 1634 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 SASH1O94885 1247 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 CRKLP46109 303 aaKnown RBP12.96□□□□□ -0.33
PTPRF-204ENST00000412568 GYG1P46976 350 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 CFAP100Q494V2 611 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 SMIM5Q71RC9 77 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 KAT14Q9H8E8 782 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 TMOD2Q9NZR1 351 aa12.96□□□□□ -0.33
PTPRF-204ENST00000412568 LDHCP07864 332 aa12.96□□□□□ -0.34
PTPRF-204ENST00000412568 ZNF165P49910 485 aa12.96□□□□□ -0.34
PTPRF-204ENST00000412568 BCAMP50895 628 aa12.96□□□□□ -0.34
PTPRF-204ENST00000412568 NAP1L1P55209 391 aaKnown RBP12.96□□□□□ -0.34
PTPRF-204ENST00000412568 CTSWP56202 376 aa12.96□□□□□ -0.34
PTPRF-204ENST00000412568 RTN1Q16799 776 aa12.96□□□□□ -0.34
PTPRF-204ENST00000412568 CDCA7Q9BWT1 371 aaPredicted RBP12.96□□□□□ -0.34
PTPRF-204ENST00000412568 SEC31BQ9NQW1 1179 aa12.96□□□□□ -0.34
PTPRF-204ENST00000412568 PTPRUQ92729 1446 aa12.96□□□□□ -0.34
PTPRF-204ENST00000412568 PARP10Q53GL7 1025 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 CNNM3Q8NE01 707 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 NYXQ9GZU5 481 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 SEC63Q9UGP8 760 aaKnown RBP12.95□□□□□ -0.34
PTPRF-204ENST00000412568 ZNF532Q9HCE3 1301 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 ZBTB38Q8NAP3 1195 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-204ENST00000412568 APPBP2Q92624 585 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 SETBP1Q9Y6X0 1596 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 LAMC1P11047 1609 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 CTDSPL2Q05D32 466 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 ZNF287Q9HBT7 754 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 CCDC194A0A1B0GVG4 234 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 hCG_1642624A0A1W2PR95 340 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 HLFQ16534 295 aa12.95□□□□□ -0.34
PTPRF-204ENST00000412568 TSPY3P0CV98 308 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 TSPY8P0CW00 308 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 USPL1Q5W0Q7 1092 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 GIGYF2Q6Y7W6 1299 aaKnown RBP12.94□□□□□ -0.34
PTPRF-204ENST00000412568 ZNF589Q86UQ0 364 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-204ENST00000412568 SAP30BPQ9UHR5 308 aaKnown RBP12.94□□□□□ -0.34
PTPRF-204ENST00000412568 ANKARQ7Z5J8 1434 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 PHKA1P46020 1223 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 PTPN12Q05209 780 aaKnown RBP12.94□□□□□ -0.34
PTPRF-204ENST00000412568 ME3Q16798 604 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 LPIN2Q92539 896 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 COPRSQ9NQ92 184 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 AATFQ9NY61 560 aaKnown RBP eCLIP12.94□□□□□ -0.34
PTPRF-204ENST00000412568 SPTY2D1Q68D10 685 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-204ENST00000412568 KRT23Q9C075 422 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 HELLSQ9NRZ9 838 aa12.94□□□□□ -0.34
PTPRF-204ENST00000412568 UFL1O94874 794 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms