RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 HCLS1P14317 486 aaPredicted RBP23.95■■□□□ 1.42
USP39-204ENST00000409766 STOX1Q6ZVD7 989 aa23.95■■□□□ 1.42
USP39-204ENST00000409766 ZNF445P59923 1031 aa23.94■■□□□ 1.42
USP39-204ENST00000409766 ZSCAN23Q3MJ62 389 aa23.94■■□□□ 1.42
USP39-204ENST00000409766 PI16Q6UXB8 463 aa23.94■■□□□ 1.42
USP39-204ENST00000409766 PANK2Q9BZ23 570 aa23.94■■□□□ 1.42
USP39-204ENST00000409766 MBD3O95983 291 aa23.94■■□□□ 1.42
USP39-204ENST00000409766 F13A1P00488 732 aa23.94■■□□□ 1.42
USP39-204ENST00000409766 MCAMP43121 646 aa23.94■■□□□ 1.42
USP39-204ENST00000409766 FOXD4L6Q3SYB3 417 aaPredicted RBP23.94■■□□□ 1.42
USP39-204ENST00000409766 FOXD4L3Q6VB84 417 aaPredicted RBP23.94■■□□□ 1.42
USP39-204ENST00000409766 NSFL1CQ9UNZ2 370 aaKnown RBP23.94■■□□□ 1.42
USP39-204ENST00000409766 MTMR6Q9Y217 621 aa23.93■■□□□ 1.42
USP39-204ENST00000409766 MROH5Q6ZUA9 1318 aa23.93■■□□□ 1.42
USP39-204ENST00000409766 DTNBO60941 627 aa23.93■■□□□ 1.42
USP39-204ENST00000409766 HMGB1P09429 215 aaKnown RBP23.93■■□□□ 1.42
USP39-204ENST00000409766 BCORQ6W2J9 1755 aa23.93■■□□□ 1.42
USP39-204ENST00000409766 LAMB2P55268 1798 aa23.92■■□□□ 1.42
USP39-204ENST00000409766 ARAP2Q8WZ64 1704 aa23.92■■□□□ 1.42
USP39-204ENST00000409766 FAM177BA6PVY3 158 aa23.92■■□□□ 1.42
USP39-204ENST00000409766 NTSR2O95665 410 aa23.92■■□□□ 1.42
USP39-204ENST00000409766 Q6ZUG5 572 aa23.92■■□□□ 1.42
USP39-204ENST00000409766 NIP7Q9Y221 180 aaKnown RBP eCLIP23.92■■□□□ 1.42
USP39-204ENST00000409766 FGFR2P21802 821 aa23.91■■□□□ 1.42
USP39-204ENST00000409766 TMEM87AQ8NBN3 555 aa23.91■■□□□ 1.42
USP39-204ENST00000409766 PUM3Q15397 648 aaKnown RBP23.91■■□□□ 1.42
USP39-204ENST00000409766 APPBP2Q92624 585 aa23.91■■□□□ 1.42
USP39-204ENST00000409766 ATP6V1DQ9Y5K8 247 aa23.91■■□□□ 1.42
USP39-204ENST00000409766 A0A0G2JLW4 131 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 FOXP2O15409 715 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 PDIA4P13667 645 aaKnown RBP23.9■■□□□ 1.42
USP39-204ENST00000409766 HSPA1LP34931 641 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 WASHC4Q2M389 1173 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 DHX32Q7L7V1 743 aaKnown RBP23.9■■□□□ 1.42
USP39-204ENST00000409766 USP48Q86UV5 1035 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 LPIN2Q92539 896 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 GDPD2Q9HCC8 539 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 TMEM63CQ9P1W3 806 aa23.9■■□□□ 1.42
USP39-204ENST00000409766 RBM27Q9P2N5 1060 aaKnown RBP23.9■■□□□ 1.42
USP39-204ENST00000409766 CCDC102BQ68D86 513 aa23.89■■□□□ 1.42
USP39-204ENST00000409766 LINC00116Q8NCU8 138 aa23.89■■□□□ 1.42
USP39-204ENST00000409766 RTL9Q8NET4 1388 aa23.89■■□□□ 1.42
USP39-204ENST00000409766 E7EWF7 191 aa23.89■■□□□ 1.41
USP39-204ENST00000409766 ARID4AP29374 1257 aaPredicted RBP23.89■■□□□ 1.41
USP39-204ENST00000409766 GTF3C6Q969F1 213 aa23.89■■□□□ 1.41
USP39-204ENST00000409766 SEC31BQ9NQW1 1179 aa23.89■■□□□ 1.41
USP39-204ENST00000409766 HSP90B1P14625 803 aaKnown RBP23.88■■□□□ 1.41
USP39-204ENST00000409766 PHKA1P46020 1223 aa23.88■■□□□ 1.41
USP39-204ENST00000409766 EXOSC10Q01780 885 aaKnown RBP23.88■■□□□ 1.41
USP39-204ENST00000409766 STK3Q13188 491 aa23.88■■□□□ 1.41
USP39-204ENST00000409766 CLEC4GQ6UXB4 293 aa23.88■■□□□ 1.41
USP39-204ENST00000409766 HELBQ8NG08 1087 aaPredicted RBP23.88■■□□□ 1.41
USP39-204ENST00000409766 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.88■■□□□ 1.411e-6■■■□□ 14.8
USP39-204ENST00000409766 PUS7LQ9H0K6 701 aaKnown RBP23.88■■□□□ 1.41
USP39-204ENST00000409766 ZNF652Q9Y2D9 606 aa23.88■■□□□ 1.41
USP39-204ENST00000409766 MYO5AQ9Y4I1 1855 aaKnown RBP23.88■■□□□ 1.41
USP39-204ENST00000409766 TTF1Q15361 905 aaPredicted RBP23.88■■□□□ 1.41
USP39-204ENST00000409766 CCDC152Q4G0S7 254 aa23.88■■□□□ 1.41
USP39-204ENST00000409766 LARP1BQ659C4 914 aaKnown RBP23.88■■□□□ 1.41
USP39-204ENST00000409766 USP21Q9UK80 565 aa23.88■■□□□ 1.41
USP39-204ENST00000409766 CNPY2Q9Y2B0 182 aa23.88■■□□□ 1.41
USP39-204ENST00000409766 UQCRFS1P1P0C7P4 283 aa23.87■■□□□ 1.41
USP39-204ENST00000409766 PDCP20941 246 aa23.87■■□□□ 1.41
USP39-204ENST00000409766 MPHOSPH8Q99549 860 aa23.87■■□□□ 1.41
USP39-204ENST00000409766 AGXT2Q9BYV1 514 aa23.87■■□□□ 1.41
USP39-204ENST00000409766 GADD45BO75293 160 aaPredicted RBP23.86■■□□□ 1.41
USP39-204ENST00000409766 TTLL5Q6EMB2 1281 aa23.86■■□□□ 1.41
USP39-204ENST00000409766 BRF1Q92994 677 aa23.86■■□□□ 1.41
USP39-204ENST00000409766 CTNNA3Q9UI47 895 aa23.86■■□□□ 1.41
USP39-204ENST00000409766 VPS37CA5D8V6 355 aaPredicted RBP23.86■■□□□ 1.41
USP39-204ENST00000409766 ADD2P35612 726 aa23.86■■□□□ 1.41
USP39-204ENST00000409766 ZSCAN25Q6NSZ9 544 aa23.86■■□□□ 1.41
USP39-204ENST00000409766 LRRC2Q9BYS8 371 aa23.86■■□□□ 1.41
USP39-204ENST00000409766 PIH1D3Q9NQM4 214 aaKnown RBP23.85■■□□□ 1.41
USP39-204ENST00000409766 PTF1AQ7RTS3 328 aa23.84■■□□□ 1.41
USP39-204ENST00000409766 ATRNO75882 1429 aa23.84■■□□□ 1.41
USP39-204ENST00000409766 CNTNAP4Q9C0A0 1308 aa23.84■■□□□ 1.41
USP39-204ENST00000409766 GPAA1O43292 621 aa23.84■■□□□ 1.41
USP39-204ENST00000409766 FGAP02671 866 aa23.84■■□□□ 1.41
USP39-204ENST00000409766 SLC5A1P13866 664 aa23.84■■□□□ 1.41
USP39-204ENST00000409766 SLC9C2Q5TAH2 1124 aa23.84■■□□□ 1.41
USP39-204ENST00000409766 KCNQ4P56696 695 aa23.83■■□□□ 1.41
USP39-204ENST00000409766 FGD1P98174 961 aa23.83■■□□□ 1.41
USP39-204ENST00000409766 IGHMBP2P38935 993 aaKnown RBP23.83■■□□□ 1.4
USP39-204ENST00000409766 UBE3CQ15386 1083 aa23.83■■□□□ 1.4
USP39-204ENST00000409766 THSD7AQ9UPZ6 1657 aa23.82■■□□□ 1.4
USP39-204ENST00000409766 PFKFB2O60825 505 aa23.82■■□□□ 1.4
USP39-204ENST00000409766 DNM1Q05193 864 aaKnown RBP23.82■■□□□ 1.4
USP39-204ENST00000409766 IMMTQ16891 758 aaKnown RBP23.82■■□□□ 1.4
USP39-204ENST00000409766 CDC37L1Q7L3B6 337 aa23.82■■□□□ 1.4
USP39-204ENST00000409766 BTAF1O14981 1849 aa23.82■■□□□ 1.4
USP39-204ENST00000409766 SNAP23O00161 211 aa23.81■■□□□ 1.4
USP39-204ENST00000409766 SCRN1Q12765 414 aa23.81■■□□□ 1.4
USP39-204ENST00000409766 RGL2O15211 777 aa23.81■■□□□ 1.4
USP39-204ENST00000409766 JAK2O60674 1132 aa23.81■■□□□ 1.4
USP39-204ENST00000409766 IDH1O75874 414 aaKnown RBP23.81■■□□□ 1.4
USP39-204ENST00000409766 FBXL16Q8N461 479 aa23.81■■□□□ 1.4
USP39-204ENST00000409766 SCN7AQ01118 1682 aa23.8■■□□□ 1.4
USP39-204ENST00000409766 LRSAM1Q6UWE0 723 aa23.8■■□□□ 1.4
USP39-204ENST00000409766 SPATA5Q8NB90 893 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms