RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 TMEM63CQ9P1W3 806 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 TFIP11Q9UBB9 837 aaKnown RBP13.22□□□□□ -0.29
TCOF1-203ENST00000394269 DISP2A7MBM2 1401 aa13.21□□□□□ -0.29
TCOF1-203ENST00000394269 ARFGEF2Q9Y6D5 1785 aa13.21□□□□□ -0.29
TCOF1-203ENST00000394269 FSD2A1L4K1 749 aa13.21□□□□□ -0.29
TCOF1-203ENST00000394269 WTIPA6NIX2 430 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-203ENST00000394269 ST3GAL1Q11201 340 aa13.21□□□□□ -0.29
TCOF1-203ENST00000394269 ANKRD1Q15327 319 aa13.21□□□□□ -0.29
TCOF1-203ENST00000394269 CLEC17AQ6ZS10 378 aa13.21□□□□□ -0.29
TCOF1-203ENST00000394269 NCOA5Q9HCD5 579 aaKnown RBP13.21□□□□□ -0.29
TCOF1-203ENST00000394269 GPHNQ9NQX3 736 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-203ENST00000394269 HELLSQ9NRZ9 838 aa13.21□□□□□ -0.29
TCOF1-203ENST00000394269 IGHMBP2P38935 993 aaKnown RBP13.21□□□□□ -0.3
TCOF1-203ENST00000394269 CEBPZQ03701 1054 aaKnown RBP13.21□□□□□ -0.3
TCOF1-203ENST00000394269 N4BP2Q86UW6 1770 aaPredicted RBP13.21□□□□□ -0.3
TCOF1-203ENST00000394269 EP400Q96L91 3159 aa13.21□□□□□ -0.3
TCOF1-203ENST00000394269 BCAMP50895 628 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 FAM184AQ8NB25 1140 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 PLA2G12BQ9BX93 195 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 CAMTA2O94983 1202 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 F13A1P00488 732 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 ABCF2Q9UG63 623 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 SRP68Q9UHB9 627 aaKnown RBP13.2□□□□□ -0.3
TCOF1-203ENST00000394269 E7EWF7 191 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 H3BQV1 296 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 GUCY1B3Q02153 619 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 LRRFIP1Q32MZ4 808 aaKnown RBP13.2□□□□□ -0.3
TCOF1-203ENST00000394269 IFFO2Q5TF58 517 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 LINC00116Q8NCU8 138 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 TOMM22Q9NS69 142 aa13.2□□□□□ -0.3
TCOF1-203ENST00000394269 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-203ENST00000394269 GPAA1O43292 621 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 FGAP02671 866 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 CCDC152Q4G0S7 254 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 CDC37L1Q7L3B6 337 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 ANP32BQ92688 251 aaKnown RBP13.19□□□□□ -0.3
TCOF1-203ENST00000394269 KCNB2Q92953 911 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 RPAP1Q9BWH6 1393 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-203ENST00000394269 CDHR2Q9BYE9 1310 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 GNPATO15228 680 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 NASPP49321 788 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-203ENST00000394269 KLHL34Q8N239 644 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 SMARCC1Q92922 1105 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-203ENST00000394269 IL17RAQ96F46 866 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.19□□□□□ -0.32e-6■■■□□ 17.5
TCOF1-203ENST00000394269 PIH1D3Q9NQM4 214 aaKnown RBP13.19□□□□□ -0.3
TCOF1-203ENST00000394269 MTMR6Q9Y217 621 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 ERFEQ4G0M1 354 aa13.19□□□□□ -0.3
TCOF1-203ENST00000394269 NHSL1Q5SYE7 1610 aa13.18□□□□□ -0.3
TCOF1-203ENST00000394269 PUM3Q15397 648 aaKnown RBP13.18□□□□□ -0.3
TCOF1-203ENST00000394269 USPL1Q5W0Q7 1092 aa13.18□□□□□ -0.3
TCOF1-203ENST00000394269 DHX32Q7L7V1 743 aaKnown RBP13.18□□□□□ -0.3
TCOF1-203ENST00000394269 ZNF652Q9Y2D9 606 aa13.18□□□□□ -0.3
TCOF1-203ENST00000394269 GLI3P10071 1580 aa13.18□□□□□ -0.3
TCOF1-203ENST00000394269 IMMTQ16891 758 aaKnown RBP13.18□□□□□ -0.3
TCOF1-203ENST00000394269 VPS37DQ86XT2 251 aa13.18□□□□□ -0.3
TCOF1-203ENST00000394269 ATP6V1DQ9Y5K8 247 aa13.18□□□□□ -0.3
TCOF1-203ENST00000394269 ZNF213O14771 459 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 SLC5A1P13866 664 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 INCENPQ9NQS7 918 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 ZNF532Q9HCE3 1301 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 TOGARAM1Q9Y4F4 1720 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 C3orf67Q6ZVT6 689 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 RALYLQ86SE5 291 aaKnown RBP13.17□□□□□ -0.3
TCOF1-203ENST00000394269 MAGEB6Q8N7X4 407 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 MIGA1Q8NAN2 632 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 LPIN2Q92539 896 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 AIDAQ96BJ3 306 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 TRIM44Q96DX7 344 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-203ENST00000394269 LRP2BPQ9P2M1 347 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 DENND2AQ9ULE3 1009 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 JAG2Q9Y219 1238 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 ZPR1O75312 459 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 BARGINQ6ZT62 677 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 ILDR1Q86SU0 546 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-203ENST00000394269 APPBP2Q92624 585 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 DSCC1Q9BVC3 393 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 FBXO3Q9UK99 471 aa13.17□□□□□ -0.3
TCOF1-203ENST00000394269 GOLGA6L4A6NEF3 574 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 PLCB2Q00722 1185 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 ABCA3Q99758 1704 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 CCNL1Q9UK58 526 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-203ENST00000394269 MBD3O95983 291 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 SCRN1Q12765 414 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 RRP12Q5JTH9 1297 aaKnown RBP13.16□□□□□ -0.3
TCOF1-203ENST00000394269 ZFYP08048 801 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-203ENST00000394269 RXRAP19793 462 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 GYG1P46976 350 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 CHRNDQ07001 517 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 RASGRF1Q13972 1273 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 PARP10Q53GL7 1025 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 TBC1D9BQ66K14 1250 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 SPATA5Q8NB90 893 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 RBSNQ9H1K0 784 aa13.16□□□□□ -0.3
TCOF1-203ENST00000394269 NBPF5PQ86XG9 351 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-203ENST00000394269 CCDC144CPQ8IYA2 1237 aa13.15□□□□□ -0.3
TCOF1-203ENST00000394269 CTNNA3Q9UI47 895 aa13.15□□□□□ -0.3
TCOF1-203ENST00000394269 TRDNQ13061 729 aa13.15□□□□□ -0.3
TCOF1-203ENST00000394269 SETDB2Q96T68 719 aa13.15□□□□□ -0.3
TCOF1-203ENST00000394269 NTSR2O95665 410 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms