RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 BPIFA3Q9BQP9 254 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 ATG3Q9NT62 314 aa11.7□□□□□ -0.54
COL17A1-203ENST00000393211 KIF20AO95235 890 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 CTDNEP1O95476 244 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 ATP2B3Q16720 1220 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 CEP135Q66GS9 1140 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 ADALQ6DHV7 355 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 STOX1Q6ZVD7 989 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 TTC5Q8N0Z6 440 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 DDX11Q96FC9 970 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 C16orf45Q96MC5 204 aaPredicted RBP11.69□□□□□ -0.54
COL17A1-203ENST00000393211 PAG1Q9NWQ8 432 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 RTEL1Q9NZ71 1219 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 AXIN2Q9Y2T1 843 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 RGPD5Q99666 1765 aa11.69□□□□□ -0.54
COL17A1-203ENST00000393211 A0A087WZG4 1122 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 H7C1W4 665 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 IL15P40933 162 aaPredicted RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 KCNJ6P48051 423 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 CCDC144BQ3MJ40 725 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 C11orf57Q6ZUT1 292 aaPredicted RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 NYAP1Q6ZVC0 841 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 UBE3BQ7Z3V4 1068 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 CCDC144CPQ8IYA2 1237 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 MRPS27Q92552 414 aaKnown RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 ZNF496Q96IT1 587 aaPredicted RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 OSBPL5Q9H0X9 879 aaPredicted RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 CTNNA3Q9UI47 895 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 ALS2Q96Q42 1657 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 PKD1L3Q7Z443 1732 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 PARP4Q9UKK3 1724 aaKnown RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 E7EWF7 191 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 DHX16O60231 1041 aaKnown RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 CIAO1O76071 339 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 YEATS4O95619 227 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 PDIA3P30101 505 aaKnown RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 CBX1P83916 185 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 SLC39A6Q13433 755 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 PTPN14Q15678 1187 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 CCDC129Q6ZRS4 1044 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 KRT28Q7Z3Y7 464 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 DHX40Q8IX18 779 aaKnown RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 NFATC2IPQ8NCF5 419 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 USP28Q96RU2 1077 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 SEC62Q99442 399 aaKnown RBP11.68□□□□□ -0.54
COL17A1-203ENST00000393211 GOLPH3LQ9H4A5 285 aa11.68□□□□□ -0.54
COL17A1-203ENST00000393211 WDR19Q8NEZ3 1342 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 RNF113AO15541 343 aaKnown RBP11.67□□□□□ -0.54
COL17A1-203ENST00000393211 SKILP12757 684 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 FOXO4P98177 505 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 APOBRQ0VD83 1088 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 DDX46Q7L014 1031 aaKnown RBP11.67□□□□□ -0.54
COL17A1-203ENST00000393211 BRAPQ7Z569 592 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 FMR1NBQ8N0W7 255 aaPredicted RBP11.67□□□□□ -0.54
COL17A1-203ENST00000393211 FSIP1Q8NA03 581 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 KCNG4Q8TDN1 519 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 FBXO3Q9UK99 471 aa11.67□□□□□ -0.54
COL17A1-203ENST00000393211 CARMIL3Q8ND23 1372 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 ABCC12Q96J65 1359 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 FAM177BA6PVY3 158 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 ZFYP08048 801 aaPredicted RBP11.66□□□□□ -0.54
COL17A1-203ENST00000393211 HSPD1P10809 573 aaKnown RBP11.66□□□□□ -0.54
COL17A1-203ENST00000393211 ME1P48163 572 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 TPM4P67936 248 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 SLFNL1Q499Z3 407 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 LMBR1LQ6UX01 489 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 ATG9AQ7Z3C6 839 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 CCDC150Q8NCX0 1101 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 ORAI2Q96SN7 254 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 ARID3AQ99856 593 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 POLR3EQ9NVU0 708 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 USP16Q9Y5T5 823 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 COL18A1P39060 1754 aa11.66□□□□□ -0.54
COL17A1-203ENST00000393211 CCDC69A6NI79 296 aa11.65□□□□□ -0.54
COL17A1-203ENST00000393211 NRDCO43847 1150 aa11.65□□□□□ -0.54
COL17A1-203ENST00000393211 CCZ1BP86790 482 aa11.65□□□□□ -0.54
COL17A1-203ENST00000393211 CCZ1P86791 482 aaPredicted RBP11.65□□□□□ -0.54
COL17A1-203ENST00000393211 GABPB1Q06547 395 aaPredicted RBP11.65□□□□□ -0.54
COL17A1-203ENST00000393211 ZRSR1Q15695 479 aaKnown RBP11.65□□□□□ -0.54
COL17A1-203ENST00000393211 CCAR2Q8N163 923 aaKnown RBP11.65□□□□□ -0.54
COL17A1-203ENST00000393211 KIF18AQ8NI77 898 aa11.65□□□□□ -0.54
COL17A1-203ENST00000393211 ERO1AQ96HE7 468 aa11.65□□□□□ -0.54
COL17A1-203ENST00000393211 DDX41Q9UJV9 622 aaKnown RBP11.65□□□□□ -0.54
COL17A1-203ENST00000393211 PCDHA7Q9UN72 937 aa11.65□□□□□ -0.54
COL17A1-203ENST00000393211 MORC2Q9Y6X9 1032 aaPredicted RBP11.65□□□□□ -0.54
COL17A1-203ENST00000393211 NUP188Q5SRE5 1749 aa11.65□□□□□ -0.55
COL17A1-203ENST00000393211 PSDA5PKW4 1024 aaPredicted RBP11.64□□□□□ -0.55
COL17A1-203ENST00000393211 EYA2O00167 538 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 GOLIM4O00461 696 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 U2AF2P26368 475 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL17A1-203ENST00000393211 FAM193AP78312 1265 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 CEBPZQ03701 1054 aaKnown RBP11.64□□□□□ -0.55
COL17A1-203ENST00000393211 ILDR1Q86SU0 546 aaPredicted RBP11.64□□□□□ -0.55
COL17A1-203ENST00000393211 LINC00301Q8NCQ3 95 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 ZNF397Q8NF99 534 aaPredicted RBP11.64□□□□□ -0.55
COL17A1-203ENST00000393211 SDF4Q9BRK5 362 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 LRRC2Q9BYS8 371 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 NLRP2Q9NX02 1062 aa11.64□□□□□ -0.55
COL17A1-203ENST00000393211 CWC25Q9NXE8 425 aaPredicted RBP11.64□□□□□ -0.55
COL17A1-203ENST00000393211 KIAA1468Q9P260 1216 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms