RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ZBTB12Q9Y330 459 aaPredicted RBP16.65■□□□□ 0.26
VPS28-202ENST00000377348 SCN9AQ15858 1988 aa16.65■□□□□ 0.26
VPS28-202ENST00000377348 IQCA1LA6NCM1 817 aa16.64■□□□□ 0.25
VPS28-202ENST00000377348 POTEIP0CG38 1075 aa16.64■□□□□ 0.25
VPS28-202ENST00000377348 POTEJP0CG39 1038 aa16.64■□□□□ 0.25
VPS28-202ENST00000377348 EPS15P42566 896 aa16.64■□□□□ 0.25
VPS28-202ENST00000377348 RRP1P56182 461 aaKnown RBP16.64■□□□□ 0.25
VPS28-202ENST00000377348 UBE4AQ14139 1066 aa16.64■□□□□ 0.25
VPS28-202ENST00000377348 COA1Q9GZY4 146 aa16.64■□□□□ 0.25
VPS28-202ENST00000377348 TAF1DQ9H5J8 278 aaPredicted RBP16.64■□□□□ 0.25
VPS28-202ENST00000377348 HACL1Q9UJ83 578 aa16.64■□□□□ 0.25
VPS28-202ENST00000377348 SHTN1A0MZ66 631 aa16.63■□□□□ 0.25
VPS28-202ENST00000377348 CIAO1O76071 339 aa16.63■□□□□ 0.25
VPS28-202ENST00000377348 PDE8BO95263 885 aa16.63■□□□□ 0.25
VPS28-202ENST00000377348 ATP8B2P98198 1209 aa16.63■□□□□ 0.25
VPS28-202ENST00000377348 C15orf52Q6ZUT6 534 aaKnown RBP16.63■□□□□ 0.25
VPS28-202ENST00000377348 PODNQ7Z5L7 613 aa16.63■□□□□ 0.25
VPS28-202ENST00000377348 TOMM70O94826 608 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 LMOD1P29536 600 aaPredicted RBP16.62■□□□□ 0.25
VPS28-202ENST00000377348 EPHX2P34913 555 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 GYG1P46976 350 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 CEP85Q6P2H3 762 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 FBXW7Q969H0 707 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 MXD3Q9BW11 206 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 CD209Q9NNX6 404 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 GPRC5DQ9NZD1 345 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 FBXO3Q9UK99 471 aa16.62■□□□□ 0.25
VPS28-202ENST00000377348 USP17L3A6NCW0 530 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 USP17L4A6NCW7 530 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 VIL1P09327 827 aaKnown RBP16.61■□□□□ 0.25
VPS28-202ENST00000377348 IL15P40933 162 aaPredicted RBP16.61■□□□□ 0.25
VPS28-202ENST00000377348 C1QTNF8P60827 252 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 POLA2Q14181 598 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 PUM3Q15397 648 aaKnown RBP16.61■□□□□ 0.25
VPS28-202ENST00000377348 EAPPQ56P03 285 aaPredicted RBP16.61■□□□□ 0.25
VPS28-202ENST00000377348 USP17L1Q7RTZ2 530 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 ZNF804AQ7Z570 1209 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 SSH3Q8TE77 659 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 FAM84BQ96KN1 310 aaPredicted RBP16.61■□□□□ 0.25
VPS28-202ENST00000377348 ZBTB40Q9NUA8 1239 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 SCN4AP35499 1836 aa16.61■□□□□ 0.25
VPS28-202ENST00000377348 FGFR2P21802 821 aa16.6■□□□□ 0.25
VPS28-202ENST00000377348 RSBN1LQ6PCB5 846 aaPredicted RBP16.6■□□□□ 0.25
VPS28-202ENST00000377348 RBM46Q8TBY0 533 aaKnown RBP16.6■□□□□ 0.25
VPS28-202ENST00000377348 CEP126Q9P2H0 1117 aa16.6■□□□□ 0.25
VPS28-202ENST00000377348 JAG2Q9Y219 1238 aa16.6■□□□□ 0.25
VPS28-202ENST00000377348 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.6■□□□□ 0.25
VPS28-202ENST00000377348 HIBADHP31937 336 aaKnown RBP16.59■□□□□ 0.25
VPS28-202ENST00000377348 GTF2IP78347 998 aa16.59■□□□□ 0.25
VPS28-202ENST00000377348 TFCP2Q12800 502 aa16.59■□□□□ 0.25
VPS28-202ENST00000377348 MICALL2Q8IY33 904 aa16.59■□□□□ 0.25
VPS28-202ENST00000377348 CNOT7Q9UIV1 285 aaKnown RBP16.59■□□□□ 0.25
VPS28-202ENST00000377348 IL1R1P14778 569 aa16.58■□□□□ 0.24
VPS28-202ENST00000377348 BCAMP50895 628 aa16.58■□□□□ 0.24
VPS28-202ENST00000377348 ATP2B3Q16720 1220 aa16.58■□□□□ 0.24
VPS28-202ENST00000377348 DACT2Q5SW24 774 aa16.58■□□□□ 0.24
VPS28-202ENST00000377348 TTLL5Q6EMB2 1281 aa16.58■□□□□ 0.24
VPS28-202ENST00000377348 LPIN2Q92539 896 aa16.58■□□□□ 0.24
VPS28-202ENST00000377348 DPF2Q92785 391 aa16.58■□□□□ 0.24
VPS28-202ENST00000377348 IQSEC3Q9UPP2 1182 aaPredicted RBP16.58■□□□□ 0.24
VPS28-202ENST00000377348 PSME4Q14997 1843 aa16.57■□□□□ 0.24
VPS28-202ENST00000377348 IFIT1P09914 478 aaKnown RBP16.57■□□□□ 0.24
VPS28-202ENST00000377348 SLC5A1P13866 664 aa16.57■□□□□ 0.24
VPS28-202ENST00000377348 RPS12P25398 132 aaKnown RBP16.57■□□□□ 0.24
VPS28-202ENST00000377348 G3BP1Q13283 466 aaKnown RBP eCLIP16.57■□□□□ 0.24
VPS28-202ENST00000377348 STRIP1Q5VSL9 837 aa16.57■□□□□ 0.24
VPS28-202ENST00000377348 FBXO33Q7Z6M2 555 aa16.57■□□□□ 0.24
VPS28-202ENST00000377348 VPS37DQ86XT2 251 aa16.57■□□□□ 0.24
VPS28-202ENST00000377348 TRPM4Q8TD43 1214 aa16.57■□□□□ 0.24
VPS28-202ENST00000377348 ADARB2Q9NS39 739 aaKnown RBP16.57■□□□□ 0.24
VPS28-202ENST00000377348 CLEC11AQ9Y240 323 aa16.57■□□□□ 0.24
VPS28-202ENST00000377348 ZNF646O15015 1829 aaPredicted RBP16.56■□□□□ 0.24
VPS28-202ENST00000377348 SURF6O75683 361 aaKnown RBP16.56■□□□□ 0.24
VPS28-202ENST00000377348 SASH1O94885 1247 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 EGFRP00533 1210 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 CAVIN4Q5BKX8 364 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 SAMD7Q7Z3H4 446 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 LDHDQ86WU2 507 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 SIRT2Q8IXJ6 389 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 SMC1BQ8NDV3 1235 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 TDRD7Q8NHU6 1098 aaKnown RBP16.56■□□□□ 0.24
VPS28-202ENST00000377348 GMLQ99445 158 aa16.56■□□□□ 0.24
VPS28-202ENST00000377348 CHMP4BQ9H444 224 aaKnown RBP16.56■□□□□ 0.24
VPS28-202ENST00000377348 H7C1D1 291 aa16.55■□□□□ 0.24
VPS28-202ENST00000377348 ADORA1P30542 326 aa16.55■□□□□ 0.24
VPS28-202ENST00000377348 HIRAP54198 1017 aaPredicted RBP16.55■□□□□ 0.24
VPS28-202ENST00000377348 TIMM10P62072 90 aa16.55■□□□□ 0.24
VPS28-202ENST00000377348 OS9Q13438 667 aaPredicted RBP16.55■□□□□ 0.24
VPS28-202ENST00000377348 TBC1D10BQ4KMP7 808 aaPredicted RBP16.55■□□□□ 0.24
VPS28-202ENST00000377348 RBM26Q5T8P6 1007 aaKnown RBP16.55■□□□□ 0.24
VPS28-202ENST00000377348 USP50Q70EL3 339 aaPredicted RBP16.55■□□□□ 0.24
VPS28-202ENST00000377348 PNMA8AQ86V59 439 aaPredicted RBP16.55■□□□□ 0.24
VPS28-202ENST00000377348 AGBL3Q8NEM8 1001 aa16.55■□□□□ 0.24
VPS28-202ENST00000377348 ZNF609O15014 1411 aa16.54■□□□□ 0.24
VPS28-202ENST00000377348 ADAMTSL1Q8N6G6 1762 aa16.54■□□□□ 0.24
VPS28-202ENST00000377348 A0A1B0GUL7 405 aa16.54■□□□□ 0.24
VPS28-202ENST00000377348 CHADLQ6NUI6 762 aa16.54■□□□□ 0.24
VPS28-202ENST00000377348 RPAP2Q8IXW5 612 aaPredicted RBP16.54■□□□□ 0.24
VPS28-202ENST00000377348 CERS5Q8N5B7 392 aa16.54■□□□□ 0.24
VPS28-202ENST00000377348 CRBNQ96SW2 442 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms