RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FNDC3AQ9Y2H6 1198 aaKnown RBP4.53□□□□□ -1.68
VPS13A-206ENST00000376646 LINC01387J3KSC0 135 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 DLL1O00548 723 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 NOS3P29474 1203 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 HYAL2Q12891 473 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 FOXD4L6Q3SYB3 417 aaPredicted RBP4.52□□□□□ -1.69
VPS13A-206ENST00000376646 MCTP1Q6DN14 999 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 FOXD4L3Q6VB84 417 aaPredicted RBP4.52□□□□□ -1.69
VPS13A-206ENST00000376646 NCAPG2Q86XI2 1143 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 GALNT11Q8NCW6 608 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 WFDC12Q8WWY7 111 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 TP53INP1Q96A56 240 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 RBSNQ9H1K0 784 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 SH2B1Q9NRF2 756 aaPredicted RBP4.52□□□□□ -1.69
VPS13A-206ENST00000376646 AAMPQ13685 434 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 AGGF1Q8N302 714 aaeCLIP4.52□□□□□ -1.69
VPS13A-206ENST00000376646 MEGF10Q96KG7 1140 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 CARD10Q9BWT7 1032 aa4.52□□□□□ -1.69
VPS13A-206ENST00000376646 DTWD1Q8N5C7 304 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 CEP120Q8N960 986 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 SPACA7Q96KW9 195 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 CCDC87Q9NVE4 849 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 KIF4AO95239 1232 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 WISP1O95388 367 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 EPHA1P21709 976 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 PRSS36Q5K4E3 855 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 PDE12Q6L8Q7 609 aaKnown RBP4.51□□□□□ -1.69
VPS13A-206ENST00000376646 IGF2-ASQ6U949 168 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 POP1Q99575 1024 aaKnown RBP4.51□□□□□ -1.69
VPS13A-206ENST00000376646 SSBP4Q9BWG4 385 aaPredicted RBP4.51□□□□□ -1.69
VPS13A-206ENST00000376646 CHRDQ9H2X0 955 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 KCNK4Q9NYG8 393 aa4.51□□□□□ -1.69
VPS13A-206ENST00000376646 FOXD3Q9UJU5 478 aaPredicted RBP4.51□□□□□ -1.69
VPS13A-206ENST00000376646 CES1P23141 567 aa4.5□□□□□ -1.69
VPS13A-206ENST00000376646 SERPINB4P48594 390 aa4.5□□□□□ -1.69
VPS13A-206ENST00000376646 PBX4Q9BYU1 374 aa4.5□□□□□ -1.69
VPS13A-206ENST00000376646 PPME1Q9Y570 386 aa4.5□□□□□ -1.69
VPS13A-206ENST00000376646 EREGO14944 169 aa4.49□□□□□ -1.69
VPS13A-206ENST00000376646 DDX3YO15523 660 aaKnown RBP4.49□□□□□ -1.69
VPS13A-206ENST00000376646 FZD6O60353 706 aa4.49□□□□□ -1.69
VPS13A-206ENST00000376646 MZF1P28698 734 aaPredicted RBP4.49□□□□□ -1.69
VPS13A-206ENST00000376646 SMNDC1O75940 238 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS13A-206ENST00000376646 LATS2Q9NRM7 1088 aa4.49□□□□□ -1.69
VPS13A-206ENST00000376646 SALL4Q9UJQ4 1053 aa4.49□□□□□ -1.69
VPS13A-206ENST00000376646 TIMELESSQ9UNS1 1208 aa4.49□□□□□ -1.69
VPS13A-206ENST00000376646 NFKBIEO00221 500 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 TM4SF5O14894 197 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 CDC27P30260 824 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 HGSNATQ68CP4 663 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 AKTIPQ9H8T0 292 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 F8W735 103 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-206ENST00000376646 PSPNO60542 156 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 TNFRSF21O75509 655 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 PCSK2P16519 638 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 FKBP4Q02790 459 aaKnown RBP eCLIP4.48□□□□□ -1.69
VPS13A-206ENST00000376646 RETREG2Q8NC44 543 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 TTC16Q8NEE8 873 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 DZANK1Q9NVP4 752 aa4.48□□□□□ -1.69
VPS13A-206ENST00000376646 ADAM11O75078 769 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 POLR3DP05423 398 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-206ENST00000376646 NPR3P17342 541 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 XKR5Q6UX68 686 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 KLHDC7BQ96G42 594 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 H3BRB1 525 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 FSCN2O14926 492 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 FAM13AO94988 1023 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 GLB1P16278 677 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 UBASH3BQ8TF42 649 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 FOXD4L4Q8WXT5 416 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-206ENST00000376646 SLC7A3Q8WY07 619 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 ZKSCAN3Q9BRR0 538 aa4.47□□□□□ -1.69
VPS13A-206ENST00000376646 MRPL18Q9H0U6 180 aaKnown RBP4.47□□□□□ -1.69
VPS13A-206ENST00000376646 TUT1Q9H6E5 874 aaKnown RBP4.47□□□□□ -1.69
VPS13A-206ENST00000376646 PHACTR2O75167 634 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 PTPRAP18433 802 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 CD68P34810 354 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-206ENST00000376646 ECM1Q16610 540 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 ALKBH2Q6NS38 261 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 ACAD11Q709F0 780 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 UBL7Q96S82 380 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-206ENST00000376646 OSMRQ99650 979 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 METTL12A8MUP2 240 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 PDE2AO00408 941 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-206ENST00000376646 H2AFB1P0C5Y9 115 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 H2AFB2P0C5Z0 115 aa4.46□□□□□ -1.7
VPS13A-206ENST00000376646 SF3B2Q13435 895 aaKnown RBP4.46□□□□□ -1.7
VPS13A-206ENST00000376646 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.46□□□□□ -1.7
VPS13A-206ENST00000376646 DZIP1LQ8IYY4 767 aaKnown RBP4.46□□□□□ -1.7
VPS13A-206ENST00000376646 ICMTO60725 284 aa4.45□□□□□ -1.7
VPS13A-206ENST00000376646 RPLP1P05386 114 aaKnown RBP4.45□□□□□ -1.7
VPS13A-206ENST00000376646 NLRP12P59046 1061 aa4.45□□□□□ -1.7
VPS13A-206ENST00000376646 PEAR1Q5VY43 1037 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-206ENST00000376646 KIAA1211Q6ZU35 1233 aa4.45□□□□□ -1.7
VPS13A-206ENST00000376646 GJD3Q8N144 294 aa4.45□□□□□ -1.7
VPS13A-206ENST00000376646 TMEM130Q8N3G9 435 aa4.45□□□□□ -1.7
VPS13A-206ENST00000376646 ADAM19Q9H013 955 aa4.45□□□□□ -1.7
VPS13A-206ENST00000376646 USTQ9Y2C2 406 aa4.45□□□□□ -1.7
VPS13A-206ENST00000376646 USPL1Q5W0Q7 1092 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 ASAP3Q8TDY4 903 aa4.44□□□□□ -1.7
VPS13A-206ENST00000376646 SNX29Q8TEQ0 813 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms