RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 KCNJ4P48050 445 aa18.14■□□□□ 0.49
PTCH1-202ENST00000375271 HPS5Q9UPZ3 1129 aa18.14■□□□□ 0.49
PTCH1-202ENST00000375271 MAP3K2Q9Y2U5 619 aa18.14■□□□□ 0.49
PTCH1-202ENST00000375271 PDE4DIPQ5VU43 2346 aa18.14■□□□□ 0.49
PTCH1-202ENST00000375271 TBC1D8O95759 1140 aa18.13■□□□□ 0.49
PTCH1-202ENST00000375271 MKRN3Q13064 507 aaKnown RBP18.13■□□□□ 0.49
PTCH1-202ENST00000375271 SCAF8Q9UPN6 1271 aaKnown RBP18.13■□□□□ 0.49
PTCH1-202ENST00000375271 SPEF2Q9C093 1822 aa18.13■□□□□ 0.49
PTCH1-202ENST00000375271 APAF1O14727 1248 aa18.12■□□□□ 0.49
PTCH1-202ENST00000375271 MMP14P50281 582 aa18.12■□□□□ 0.49
PTCH1-202ENST00000375271 CCT4P50991 539 aaKnown RBP18.12■□□□□ 0.49
PTCH1-202ENST00000375271 NBPF9Q3BBW0 867 aa18.12■□□□□ 0.49
PTCH1-202ENST00000375271 PRPF38BQ5VTL8 546 aaKnown RBP18.12■□□□□ 0.49
PTCH1-202ENST00000375271 PRAMEF18Q5VWM3 479 aa18.12■□□□□ 0.49
PTCH1-202ENST00000375271 MOB2Q70IA6 237 aa18.12■□□□□ 0.49
PTCH1-202ENST00000375271 APOBEC3FQ8IUX4 373 aaKnown RBP18.12■□□□□ 0.49
PTCH1-202ENST00000375271 ZNF296Q8WUU4 475 aaPredicted RBP18.12■□□□□ 0.49
PTCH1-202ENST00000375271 GMLQ99445 158 aa18.12■□□□□ 0.49
PTCH1-202ENST00000375271 COA1Q9GZY4 146 aa18.12■□□□□ 0.49
PTCH1-202ENST00000375271 BSDC1Q9NW68 430 aaPredicted RBP18.12■□□□□ 0.49
PTCH1-202ENST00000375271 MYH3P11055 1940 aa18.11■□□□□ 0.49
PTCH1-202ENST00000375271 TNRC18O15417 2968 aaPredicted RBP18.11■□□□□ 0.49
PTCH1-202ENST00000375271 PRKG1Q13976 671 aa18.11■□□□□ 0.49
PTCH1-202ENST00000375271 STRIP1Q5VSL9 837 aa18.11■□□□□ 0.49
PTCH1-202ENST00000375271 MPHOSPH8Q99549 860 aa18.11■□□□□ 0.49
PTCH1-202ENST00000375271 MINPP1Q9UNW1 487 aa18.11■□□□□ 0.49
PTCH1-202ENST00000375271 SASH1O94885 1247 aa18.1■□□□□ 0.49
PTCH1-202ENST00000375271 ZNF853P0CG23 659 aa18.1■□□□□ 0.49
PTCH1-202ENST00000375271 KSR2Q6VAB6 950 aa18.1■□□□□ 0.49
PTCH1-202ENST00000375271 ANKRD2Q9GZV1 360 aa18.1■□□□□ 0.49
PTCH1-202ENST00000375271 GREM2Q9H772 168 aa18.1■□□□□ 0.49
PTCH1-202ENST00000375271 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.1■□□□□ 0.49
PTCH1-202ENST00000375271 LEMD3Q9Y2U8 911 aa18.1■□□□□ 0.49
PTCH1-202ENST00000375271 PI4KAP2A4QPH2 592 aa18.09■□□□□ 0.49
PTCH1-202ENST00000375271 WNT10BO00744 389 aa18.09■□□□□ 0.49
PTCH1-202ENST00000375271 DACT2Q5SW24 774 aa18.09■□□□□ 0.49
PTCH1-202ENST00000375271 PI4KAP1Q8N8J0 262 aa18.09■□□□□ 0.49
PTCH1-202ENST00000375271 GPR25O00155 361 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 FKTNO75072 461 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 ALDH1A1P00352 501 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 TTLL5Q6EMB2 1281 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 FBXO46Q6PJ61 603 aaPredicted RBP18.08■□□□□ 0.48
PTCH1-202ENST00000375271 UBE3BQ7Z3V4 1068 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 KIAA0825Q8IV33 1275 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 C8orf58Q8NAV2 365 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 TTLL11Q8NHH1 800 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 MXD3Q9BW11 206 aa18.08■□□□□ 0.48
PTCH1-202ENST00000375271 ZNF804BA4D1E1 1349 aa18.07■□□□□ 0.48
PTCH1-202ENST00000375271 MYO1BO43795 1136 aa18.07■□□□□ 0.48
PTCH1-202ENST00000375271 TM4SF4P48230 202 aa18.07■□□□□ 0.48
PTCH1-202ENST00000375271 MYH16Q9H6N6 1097 aa18.07■□□□□ 0.48
PTCH1-202ENST00000375271 ANGEL1Q9UNK9 670 aaKnown RBP18.07■□□□□ 0.48
PTCH1-202ENST00000375271 PPP1R12BO60237 982 aaPredicted RBP18.05■□□□□ 0.48
PTCH1-202ENST00000375271 GTF2IP78347 998 aa18.05■□□□□ 0.48
PTCH1-202ENST00000375271 DLGAP5Q15398 846 aa18.05■□□□□ 0.48
PTCH1-202ENST00000375271 CWF19L2Q2TBE0 894 aaKnown RBP18.05■□□□□ 0.48
PTCH1-202ENST00000375271 NOM1Q5C9Z4 860 aaKnown RBP18.05■□□□□ 0.48
PTCH1-202ENST00000375271 COL1A1P02452 1464 aaPredicted RBP18.05■□□□□ 0.48
PTCH1-202ENST00000375271 NEURL1BA8MQ27 555 aa18.04■□□□□ 0.48
PTCH1-202ENST00000375271 IGKV5-2P06315 115 aa18.04■□□□□ 0.48
PTCH1-202ENST00000375271 ITGA6P23229 1130 aa18.04■□□□□ 0.48
PTCH1-202ENST00000375271 PTPN12Q05209 780 aaKnown RBP18.04■□□□□ 0.48
PTCH1-202ENST00000375271 SLC10A4Q96EP9 437 aa18.04■□□□□ 0.48
PTCH1-202ENST00000375271 MANSC4A6NHS7 340 aaPredicted RBP18.03■□□□□ 0.48
PTCH1-202ENST00000375271 INHBEP58166 350 aa18.03■□□□□ 0.48
PTCH1-202ENST00000375271 OTUD7BQ6GQQ9 843 aa18.03■□□□□ 0.48
PTCH1-202ENST00000375271 GCC1Q96CN9 775 aa18.03■□□□□ 0.48
PTCH1-202ENST00000375271 CHMP3Q9Y3E7 222 aa18.03■□□□□ 0.48
PTCH1-202ENST00000375271 ANKRD18BA2A2Z9 1011 aa18.02■□□□□ 0.48
PTCH1-202ENST00000375271 FKBP5Q13451 457 aaPredicted RBP18.02■□□□□ 0.48
PTCH1-202ENST00000375271 SPRYD7Q5W111 196 aa18.02■□□□□ 0.48
PTCH1-202ENST00000375271 PRKRIP1Q9H875 184 aaPredicted RBP18.02■□□□□ 0.48
PTCH1-202ENST00000375271 PPP2R3BQ9Y5P8 575 aa18.02■□□□□ 0.48
PTCH1-202ENST00000375271 WTIPA6NIX2 430 aaPredicted RBP18.01■□□□□ 0.47
PTCH1-202ENST00000375271 SLC4A2P04920 1241 aa18.01■□□□□ 0.47
PTCH1-202ENST00000375271 RBM5P52756 815 aaKnown RBP eCLIP18.01■□□□□ 0.47
PTCH1-202ENST00000375271 TWISTNBQ3B726 338 aaPredicted RBP18.01■□□□□ 0.47
PTCH1-202ENST00000375271 SUPT20HL1Q3ZLR7 823 aa18.01■□□□□ 0.47
PTCH1-202ENST00000375271 ZNF804AQ7Z570 1209 aa18.01■□□□□ 0.47
PTCH1-202ENST00000375271 TSPYL6Q8N831 410 aa18.01■□□□□ 0.47
PTCH1-202ENST00000375271 TSR2Q969E8 191 aaKnown RBP18.01■□□□□ 0.47
PTCH1-202ENST00000375271 DEFB129Q9H1M3 183 aa18.01■□□□□ 0.47
PTCH1-202ENST00000375271 VEZTQ9HBM0 779 aa18.01■□□□□ 0.47
PTCH1-202ENST00000375271 TRIM17Q9Y577 477 aa18.01■□□□□ 0.47
PTCH1-202ENST00000375271 F8W031 263 aaPredicted RBP18■□□□□ 0.47
PTCH1-202ENST00000375271 ZBTB48P10074 688 aaPredicted RBP18■□□□□ 0.47
PTCH1-202ENST00000375271 IREB2P48200 963 aaKnown RBP18■□□□□ 0.47
PTCH1-202ENST00000375271 CHRNDQ07001 517 aa18■□□□□ 0.47
PTCH1-202ENST00000375271 TAF7LQ5H9L4 462 aa18■□□□□ 0.47
PTCH1-202ENST00000375271 TXNRD3Q86VQ6 643 aa18■□□□□ 0.47
PTCH1-202ENST00000375271 CFHR5Q9BXR6 569 aa18■□□□□ 0.47
PTCH1-202ENST00000375271 H7C1W4 665 aa17.99■□□□□ 0.47
PTCH1-202ENST00000375271 GCKRQ14397 625 aa17.99■□□□□ 0.47
PTCH1-202ENST00000375271 ERO1AQ96HE7 468 aa17.99■□□□□ 0.47
PTCH1-202ENST00000375271 CD209Q9NNX6 404 aa17.99■□□□□ 0.47
PTCH1-202ENST00000375271 KLRK1P26718 216 aa17.98■□□□□ 0.47
PTCH1-202ENST00000375271 FLIIQ13045 1269 aa17.98■□□□□ 0.47
PTCH1-202ENST00000375271 IFIT5Q13325 482 aaKnown RBP17.98■□□□□ 0.47
PTCH1-202ENST00000375271 LDLRAD1Q5T700 205 aa17.98■□□□□ 0.47
PTCH1-202ENST00000375271 INTS3Q68E01 1043 aaKnown RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms