RNA–Protein interactions for RNA: ENST00000374949.2

HLA-DQA1-202, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,060 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-202ENST00000374949 RPS12P25398 132 aaKnown RBP13.77□□□□□ -0.21
HLA-DQA1-202ENST00000374949 AAMPQ13685 434 aa13.77□□□□□ -0.21
HLA-DQA1-202ENST00000374949 DCPSQ96C86 337 aaKnown RBP13.77□□□□□ -0.21
HLA-DQA1-202ENST00000374949 EYA3Q99504 573 aa13.77□□□□□ -0.21
HLA-DQA1-202ENST00000374949 UFL1O94874 794 aa13.76□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ZNF157P51786 506 aaPredicted RBP13.76□□□□□ -0.21
HLA-DQA1-202ENST00000374949 KIF23Q02241 960 aaPredicted RBP13.76□□□□□ -0.21
HLA-DQA1-202ENST00000374949 MVPQ14764 893 aaKnown RBP13.76□□□□□ -0.21
HLA-DQA1-202ENST00000374949 C2orf69Q8N8R5 385 aa13.76□□□□□ -0.21
HLA-DQA1-202ENST00000374949 SEC31BQ9NQW1 1179 aa13.76□□□□□ -0.21
HLA-DQA1-202ENST00000374949 RPS8P62241 208 aaKnown RBP13.75□□□□□ -0.21
HLA-DQA1-202ENST00000374949 G2E3Q7L622 706 aa13.75□□□□□ -0.21
HLA-DQA1-202ENST00000374949 SULF1Q8IWU6 871 aa13.75□□□□□ -0.21
HLA-DQA1-202ENST00000374949 CDCA5Q96FF9 252 aa13.75□□□□□ -0.21
HLA-DQA1-202ENST00000374949 CCDC136Q96JN2 1154 aa13.75□□□□□ -0.21
HLA-DQA1-202ENST00000374949 HYPKQ9NX55 129 aa13.75□□□□□ -0.21
HLA-DQA1-202ENST00000374949 PAPPA2Q9BXP8 1791 aa13.75□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ZNF646O15015 1829 aaPredicted RBP13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 SLC10A3P09131 477 aa13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 TMEM57Q8N5G2 664 aa13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 CCDC102AQ96A19 550 aa13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 CCDC85AQ96PX6 553 aaPredicted RBP13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ZC3H12CQ9C0D7 883 aaKnown RBP13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 CHMP4BQ9H444 224 aaKnown RBP13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 SAGE1Q9NXZ1 904 aa13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ANKIB1Q9P2G1 1089 aa13.74□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ZNF609O15014 1411 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 G3V3G9 751 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 TRPA1O75762 1119 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 VIL1P09327 827 aaKnown RBP13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 SOX10P56693 466 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 FLIIQ13045 1269 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 TRIM28Q13263 835 aaKnown RBP13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 DCAF8Q5TAQ9 597 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ANGEL2Q5VTE6 544 aaKnown RBP13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 B4GALNT3Q6L9W6 998 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 RIC3Q7Z5B4 369 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ITPRIPQ8IWB1 547 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ZBTB38Q8NAP3 1195 aaPredicted RBP13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 JARID2Q92833 1246 aaPredicted RBP13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 PHAXQ9H814 394 aaKnown RBP13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 RNF186Q9NXI6 227 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 PODXL2Q9NZ53 605 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 GGA1Q9UJY5 639 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 DDX19BQ9UMR2 479 aa13.73□□□□□ -0.21
HLA-DQA1-202ENST00000374949 RASAL3Q86YV0 1011 aa13.72□□□□□ -0.21
HLA-DQA1-202ENST00000374949 MYD88Q99836 296 aa13.72□□□□□ -0.21
HLA-DQA1-202ENST00000374949 MYH3P11055 1940 aa13.72□□□□□ -0.21
HLA-DQA1-202ENST00000374949 TNRC18O15417 2968 aaPredicted RBP13.71□□□□□ -0.21
HLA-DQA1-202ENST00000374949 ZNF280AP59817 542 aaPredicted RBP13.71□□□□□ -0.21
HLA-DQA1-202ENST00000374949 FKBP5Q13451 457 aaPredicted RBP13.71□□□□□ -0.21
HLA-DQA1-202ENST00000374949 INTS3Q68E01 1043 aaKnown RBP13.71□□□□□ -0.21
HLA-DQA1-202ENST00000374949 RSBN1LQ6PCB5 846 aaPredicted RBP13.71□□□□□ -0.21
HLA-DQA1-202ENST00000374949 SCAF8Q9UPN6 1271 aaKnown RBP13.71□□□□□ -0.21
HLA-DQA1-202ENST00000374949 PCCAP05165 728 aaPredicted RBP13.7□□□□□ -0.22
HLA-DQA1-202ENST00000374949 SCARF1Q14162 830 aa13.7□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CCDC152Q4G0S7 254 aa13.7□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CSRNP1Q96S65 589 aa13.7□□□□□ -0.22
HLA-DQA1-202ENST00000374949 XDHP47989 1333 aa13.69□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CCT4P50991 539 aaKnown RBP13.69□□□□□ -0.22
HLA-DQA1-202ENST00000374949 MOB2Q70IA6 237 aa13.69□□□□□ -0.22
HLA-DQA1-202ENST00000374949 AGBL3Q8NEM8 1001 aa13.69□□□□□ -0.22
HLA-DQA1-202ENST00000374949 MYOZ2Q9NPC6 264 aa13.69□□□□□ -0.22
HLA-DQA1-202ENST00000374949 WTIPA6NIX2 430 aaPredicted RBP13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 ZBTB7BO15156 539 aaPredicted RBP13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 PDE8AO60658 829 aa13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 USP17L8P0C7I0 530 aa13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 HSP90B1P14625 803 aaKnown RBP13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 SLC4A10Q6U841 1118 aa13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 ANKRD18AQ8IVF6 992 aa13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CCDC191Q8NCU4 936 aa13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 GMLQ99445 158 aa13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CWC25Q9NXE8 425 aaPredicted RBP13.68□□□□□ -0.22
HLA-DQA1-202ENST00000374949 F6X3S4 739 aa13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 DDX58O95786 925 aaKnown RBP13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 PRAMEF18Q5VWM3 479 aa13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CTU1Q7Z7A3 348 aaKnown RBP13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 MXD3Q9BW11 206 aa13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 ZBTB40Q9NUA8 1239 aa13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 MED23Q9ULK4 1368 aa13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CACNA1FO60840 1977 aa13.67□□□□□ -0.22
HLA-DQA1-202ENST00000374949 PITPNM2Q9BZ72 1349 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 PI4KAP2A4QPH2 592 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 USP17L3A6NCW0 530 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 USP17L4A6NCW7 530 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 ATP2B4P23634 1241 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 CTSWP56202 376 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 FKBP1BP68106 108 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 KSR2Q6VAB6 950 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 USP17L1Q7RTZ2 530 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 PI4KAP1Q8N8J0 262 aa13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 METTL22Q9BUU2 404 aaPredicted RBP13.66□□□□□ -0.22
HLA-DQA1-202ENST00000374949 UBE2Q2LH0YL09 131 aa13.65□□□□□ -0.22
HLA-DQA1-202ENST00000374949 NBPF9Q3BBW0 867 aa13.65□□□□□ -0.22
HLA-DQA1-202ENST00000374949 DNAAF4Q8WXU2 420 aa13.65□□□□□ -0.22
HLA-DQA1-202ENST00000374949 FBXW7Q969H0 707 aa13.65□□□□□ -0.22
HLA-DQA1-202ENST00000374949 MAP3K2Q9Y2U5 619 aa13.65□□□□□ -0.22
HLA-DQA1-202ENST00000374949 SASH1O94885 1247 aa13.64□□□□□ -0.23
HLA-DQA1-202ENST00000374949 MKRN3Q13064 507 aaKnown RBP13.64□□□□□ -0.23
HLA-DQA1-202ENST00000374949 TTLL12Q14166 644 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms