RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 UTYO14607 1347 aa27.44■■□□□ 1.98
CCDC28B-201ENST00000373602 WDR33Q9C0J8 1336 aaKnown RBP27.44■■□□□ 1.98
CCDC28B-201ENST00000373602 KLRK1P26718 216 aa27.44■■□□□ 1.98
CCDC28B-201ENST00000373602 CCDC57Q2TAC2 916 aa27.44■■□□□ 1.98
CCDC28B-201ENST00000373602 ALDH1L2Q3SY69 923 aa27.44■■□□□ 1.98
CCDC28B-201ENST00000373602 NBPF7P0C2Y1 421 aaPredicted RBP27.43■■□□□ 1.98
CCDC28B-201ENST00000373602 KCNJ4P48050 445 aa27.43■■□□□ 1.98
CCDC28B-201ENST00000373602 KAZALD1Q96I82 304 aa27.43■■□□□ 1.98
CCDC28B-201ENST00000373602 SUCLG2Q96I99 432 aa27.43■■□□□ 1.98
CCDC28B-201ENST00000373602 USP17L8P0C7I0 530 aa27.42■■□□□ 1.98
CCDC28B-201ENST00000373602 DACT2Q5SW24 774 aa27.42■■□□□ 1.98
CCDC28B-201ENST00000373602 COL13A1Q5TAT6 717 aaPredicted RBP27.42■■□□□ 1.98
CCDC28B-201ENST00000373602 KRT26Q7Z3Y9 468 aa27.42■■□□□ 1.98
CCDC28B-201ENST00000373602 DCPSQ96C86 337 aaKnown RBP27.42■■□□□ 1.98
CCDC28B-201ENST00000373602 ZNF594Q96JF6 807 aaPredicted RBP27.42■■□□□ 1.98
CCDC28B-201ENST00000373602 TAF5LO75529 589 aa27.41■■□□□ 1.98
CCDC28B-201ENST00000373602 STRIP1Q5VSL9 837 aa27.41■■□□□ 1.98
CCDC28B-201ENST00000373602 SAPCD2Q86UD0 394 aa27.41■■□□□ 1.98
CCDC28B-201ENST00000373602 PCNTO95613 3336 aa27.41■■□□□ 1.98
CCDC28B-201ENST00000373602 ECE1P42892 770 aa27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 TAF7LQ5H9L4 462 aa27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 LDHAL6AQ6ZMR3 332 aa27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 C15orf52Q6ZUT6 534 aaKnown RBP27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 HELBQ8NG08 1087 aaPredicted RBP27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 CAPNS2Q96L46 248 aa27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 ZNF408Q9H9D4 720 aa27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 IRS2Q9Y4H2 1338 aa27.4■■□□□ 1.98
CCDC28B-201ENST00000373602 ZNF646O15015 1829 aaPredicted RBP27.39■■□□□ 1.98
CCDC28B-201ENST00000373602 SNAP23O00161 211 aa27.39■■□□□ 1.98
CCDC28B-201ENST00000373602 CT47B1P0C2W7 299 aaPredicted RBP27.39■■□□□ 1.98
CCDC28B-201ENST00000373602 DLK2Q6UY11 383 aa27.39■■□□□ 1.98
CCDC28B-201ENST00000373602 PAXIP1Q6ZW49 1069 aaPredicted RBP27.39■■□□□ 1.98
CCDC28B-201ENST00000373602 MYOZ2Q9NPC6 264 aa27.39■■□□□ 1.98
CCDC28B-201ENST00000373602 MYO3BQ8WXR4 1341 aa27.39■■□□□ 1.97
CCDC28B-201ENST00000373602 POLR2AP24928 1970 aaKnown RBP27.39■■□□□ 1.97
CCDC28B-201ENST00000373602 A0A1B0GUL6 1792 aa27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 SCARF1Q14162 830 aa27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 CYP4F22Q6NT55 531 aa27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 HHIPL1Q96JK4 782 aa27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 MXD3Q9BW11 206 aa27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 WBP1LQ9NX94 342 aa27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 GGA3Q9NZ52 723 aa27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 ASTN2O75129 1339 aaPredicted RBP27.38■■□□□ 1.97
CCDC28B-201ENST00000373602 ADM5C9JUS6 153 aa27.37■■□□□ 1.97
CCDC28B-201ENST00000373602 TTLL5Q6EMB2 1281 aa27.37■■□□□ 1.97
CCDC28B-201ENST00000373602 FBXW7Q969H0 707 aa27.37■■□□□ 1.97
CCDC28B-201ENST00000373602 CD209Q9NNX6 404 aa27.37■■□□□ 1.97
CCDC28B-201ENST00000373602 CNNM1Q9NRU3 951 aa27.37■■□□□ 1.97
CCDC28B-201ENST00000373602 SMC4Q9NTJ3 1288 aa27.37■■□□□ 1.97
CCDC28B-201ENST00000373602 FOXN1O15353 648 aa27.36■■□□□ 1.97
CCDC28B-201ENST00000373602 RABL6Q3YEC7 729 aaPredicted RBP27.36■■□□□ 1.97
CCDC28B-201ENST00000373602 THSD7BQ9C0I4 1608 aa27.35■■□□□ 1.97
CCDC28B-201ENST00000373602 SULF1Q8IWU6 871 aa27.35■■□□□ 1.97
CCDC28B-201ENST00000373602 AIDAQ96BJ3 306 aa27.35■■□□□ 1.97
CCDC28B-201ENST00000373602 BICC1Q9H694 974 aaKnown RBP27.35■■□□□ 1.97
CCDC28B-201ENST00000373602 GTF2IP78347 998 aa27.34■■□□□ 1.97
CCDC28B-201ENST00000373602 MAP2K1Q02750 393 aaPredicted RBP27.34■■□□□ 1.97
CCDC28B-201ENST00000373602 ANGEL2Q5VTE6 544 aaKnown RBP27.34■■□□□ 1.97
CCDC28B-201ENST00000373602 USP44Q9H0E7 712 aa27.34■■□□□ 1.97
CCDC28B-201ENST00000373602 MMP14P50281 582 aa27.33■■□□□ 1.97
CCDC28B-201ENST00000373602 GRM1Q13255 1194 aa27.33■■□□□ 1.97
CCDC28B-201ENST00000373602 OGFOD1Q8N543 542 aa27.33■■□□□ 1.97
CCDC28B-201ENST00000373602 ANKRD44Q8N8A2 993 aa27.33■■□□□ 1.97
CCDC28B-201ENST00000373602 PLIN1O60240 522 aa27.32■■□□□ 1.96
CCDC28B-201ENST00000373602 PUS3Q9BZE2 481 aaKnown RBP27.32■■□□□ 1.96
CCDC28B-201ENST00000373602 PITPNM2Q9BZ72 1349 aa27.32■■□□□ 1.96
CCDC28B-201ENST00000373602 IL1R1P14778 569 aa27.31■■□□□ 1.96
CCDC28B-201ENST00000373602 CTCFP49711 727 aaPredicted RBP27.31■■□□□ 1.96
CCDC28B-201ENST00000373602 BRPF1P55201 1214 aaPredicted RBP27.31■■□□□ 1.96
CCDC28B-201ENST00000373602 ZNF804AQ7Z570 1209 aa27.31■■□□□ 1.96
CCDC28B-201ENST00000373602 GBA2Q9HCG7 927 aaPredicted RBP27.31■■□□□ 1.96
CCDC28B-201ENST00000373602 RIPOR2Q9Y4F9 1068 aa27.31■■□□□ 1.96
CCDC28B-201ENST00000373602 MAP2K2P36507 400 aa27.3■■□□□ 1.96
CCDC28B-201ENST00000373602 HUNKP57058 714 aa27.3■■□□□ 1.96
CCDC28B-201ENST00000373602 UBE4AQ14139 1066 aa27.29■■□□□ 1.96
CCDC28B-201ENST00000373602 NBPF9Q3BBW0 867 aa27.29■■□□□ 1.96
CCDC28B-201ENST00000373602 KIAA0825Q8IV33 1275 aa27.29■■□□□ 1.96
CCDC28B-201ENST00000373602 C2orf69Q8N8R5 385 aa27.29■■□□□ 1.96
CCDC28B-201ENST00000373602 CDCA5Q96FF9 252 aa27.29■■□□□ 1.96
CCDC28B-201ENST00000373602 NOB1Q9ULX3 412 aaKnown RBP27.29■■□□□ 1.96
CCDC28B-201ENST00000373602 WNT10BO00744 389 aa27.28■■□□□ 1.96
CCDC28B-201ENST00000373602 AOC2O75106 756 aa27.28■■□□□ 1.96
CCDC28B-201ENST00000373602 HDAC9Q9UKV0 1011 aa27.28■■□□□ 1.96
CCDC28B-201ENST00000373602 MROH5Q6ZUA9 1318 aa27.27■■□□□ 1.96
CCDC28B-201ENST00000373602 TNS4Q8IZW8 715 aa27.27■■□□□ 1.96
CCDC28B-201ENST00000373602 PRDM10Q9NQV6 1147 aa27.27■■□□□ 1.96
CCDC28B-201ENST00000373602 RARSP54136 660 aaKnown RBP27.26■■□□□ 1.95
CCDC28B-201ENST00000373602 CERS5Q8N5B7 392 aa27.26■■□□□ 1.95
CCDC28B-201ENST00000373602 API5Q9BZZ5 524 aaKnown RBP27.26■■□□□ 1.95
CCDC28B-201ENST00000373602 FKBP1AP62942 108 aaKnown RBP27.25■■□□□ 1.95
CCDC28B-201ENST00000373602 LRRC24Q50LG9 513 aa27.25■■□□□ 1.95
CCDC28B-201ENST00000373602 MIER1Q8N108 512 aa27.25■■□□□ 1.95
CCDC28B-201ENST00000373602 ZBED3Q96IU2 234 aaPredicted RBP27.25■■□□□ 1.95
CCDC28B-201ENST00000373602 SASH1O94885 1247 aa27.24■■□□□ 1.95
CCDC28B-201ENST00000373602 HSPA8P11142 646 aaKnown RBP27.24■■□□□ 1.95
CCDC28B-201ENST00000373602 DIEXFQ68CQ4 756 aaKnown RBP27.24■■□□□ 1.95
CCDC28B-201ENST00000373602 RGMBQ6NW40 437 aa27.24■■□□□ 1.95
CCDC28B-201ENST00000373602 LBX1P52954 281 aa27.23■■□□□ 1.95
CCDC28B-201ENST00000373602 FAM84BQ96KN1 310 aaPredicted RBP27.23■■□□□ 1.95
CCDC28B-201ENST00000373602 BEGAINQ9BUH8 593 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms