RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GOPCQ9HD26 462 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.08□□□□□ -0.32
PTPRF-203ENST00000372407 NEBLO76041 1014 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 CYLC1P35663 651 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-203ENST00000372407 LMAN1P49257 510 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 STXBP4Q6ZWJ1 553 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 CTNNBL1Q8WYA6 563 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-203ENST00000372407 C6orf229H3BNL8 230 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 TYRO3Q06418 890 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 PPP4R3AQ6IN85 833 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 RTN1Q16799 776 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 RNF187Q5TA31 235 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-203ENST00000372407 PLEKHM2Q8IWE5 1019 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 RPGRQ92834 1020 aaKnown RBP13.07□□□□□ -0.32
PTPRF-203ENST00000372407 TRERF1Q96PN7 1200 aa13.07□□□□□ -0.32
PTPRF-203ENST00000372407 GOLGA6L10A0A0M3HER8 536 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 MYO1BO43795 1136 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 GCP02774 474 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 EIF4A2Q14240 407 aaKnown RBP13.06□□□□□ -0.32
PTPRF-203ENST00000372407 AOPEPQ8N6M6 819 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 GIMAP7Q8NHV1 300 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 CRNKL1Q9BZJ0 848 aaKnown RBP13.06□□□□□ -0.32
PTPRF-203ENST00000372407 SPTLC2O15270 562 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 RRAGBQ5VZM2 374 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 TSPYL6Q8N831 410 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 SRRTQ9BXP5 876 aaKnown RBP13.06□□□□□ -0.32
PTPRF-203ENST00000372407 EHMT1Q9H9B1 1298 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 SPAG5Q96R06 1193 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 ABCC3O15438 1527 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 LMOD1P29536 600 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-203ENST00000372407 AFMP43652 599 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 GNAQP50148 359 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 AK2P54819 239 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 CKAP4Q07065 602 aaKnown RBP13.06□□□□□ -0.32
PTPRF-203ENST00000372407 PRPF4BQ13523 1007 aaKnown RBP13.06□□□□□ -0.32
PTPRF-203ENST00000372407 DIP2BQ9P265 1576 aa13.06□□□□□ -0.32
PTPRF-203ENST00000372407 CTAGE15A4D2H0 777 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 CTAGE8P0CG41 777 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 CTAGE6Q86UF2 777 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 CTAGE4Q8IX94 777 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 ZGPATQ8N5A5 531 aaKnown RBP13.05□□□□□ -0.32
PTPRF-203ENST00000372407 SIRT1Q96EB6 747 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 EXOC1Q9NV70 894 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 PSMA7O14818 248 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 SLU7O95391 586 aaKnown RBP13.05□□□□□ -0.32
PTPRF-203ENST00000372407 MARCKSP29966 332 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-203ENST00000372407 IFI16Q16666 785 aaKnown RBP13.05□□□□□ -0.32
PTPRF-203ENST00000372407 DNAI2Q9GZS0 605 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 NMIQ13287 307 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-203ENST00000372407 AKAP4Q5JQC9 854 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 SLC9C2Q5TAH2 1124 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 TRIM75PA6NK02 468 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 SEC24BO95487 1268 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 SYT1P21579 422 aa13.05□□□□□ -0.32
PTPRF-203ENST00000372407 MAPK8IP2Q13387 824 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-203ENST00000372407 GLI2P10070 1586 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 PIK3C2GO75747 1445 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 CHMLP26374 656 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 HSP90AA4PQ58FG1 418 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 PA2G4Q9UQ80 394 aaKnown RBP13.04□□□□□ -0.32
PTPRF-203ENST00000372407 PRC1O43663 620 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 CYP7A1P22680 504 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 DDB1Q16531 1140 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 CCDC152Q4G0S7 254 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 MAATS1Q7Z4T9 603 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 SOS1Q07889 1333 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-203ENST00000372407 PER1O15534 1290 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-203ENST00000372407 USP26Q9BXU7 913 aa13.04□□□□□ -0.32
PTPRF-203ENST00000372407 IFIT1BQ5T764 474 aaKnown RBP13.03□□□□□ -0.32
PTPRF-203ENST00000372407 CTNNA2P26232 953 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 STAT6P42226 847 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 SLC39A6Q13433 755 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 CREB3L3Q68CJ9 461 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 BTG4Q9NY30 223 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 ZHX1Q9UKY1 873 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-203ENST00000372407 ARHGAP31Q2M1Z3 1444 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 HLA-DOAP06340 250 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 MTHFSDQ2M296 383 aaKnown RBP13.03□□□□□ -0.32
PTPRF-203ENST00000372407 DHX32Q7L7V1 743 aaKnown RBP13.03□□□□□ -0.32
PTPRF-203ENST00000372407 RNF216Q9NWF9 866 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-203ENST00000372407 PAG1Q9NWQ8 432 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 ARHGEF10O15013 1369 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 CCDC172P0C7W6 258 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 MCM6Q14566 821 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 SLC4A4Q9Y6R1 1079 aa13.03□□□□□ -0.32
PTPRF-203ENST00000372407 LIG1P18858 919 aa13.02□□□□□ -0.32
PTPRF-203ENST00000372407 SPECC1LQ69YQ0 1117 aa13.02□□□□□ -0.32
PTPRF-203ENST00000372407 SYCP3Q8IZU3 236 aa13.02□□□□□ -0.32
PTPRF-203ENST00000372407 RTL1A6NKG5 1358 aa13.02□□□□□ -0.32
PTPRF-203ENST00000372407 CEP112Q8N8E3 955 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 DDX17Q92841 729 aaKnown RBP13.02□□□□□ -0.33
PTPRF-203ENST00000372407 PHACTR3Q96KR7 559 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 CARD14Q9BXL6 1004 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 CABP5Q9NP86 173 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 RAD50Q92878 1312 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 FSD2A1L4K1 749 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 TBCAO75347 108 aaKnown RBP13.02□□□□□ -0.33
PTPRF-203ENST00000372407 KIAA0753Q2KHM9 967 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 PLVAPQ9BX97 442 aa13.02□□□□□ -0.33
PTPRF-203ENST00000372407 KRT24Q2M2I5 525 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms