RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 CCDC152Q4G0S7 254 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 CCDC30Q5VVM6 783 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 CCDC191Q8NCU4 936 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 ANKIB1Q9P2G1 1089 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 SCN9AQ15858 1988 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 RPS12P25398 132 aaKnown RBP13.33□□□□□ -0.28
CLRN3-201ENST00000368671 ABHD8Q96I13 439 aa13.33□□□□□ -0.28
CLRN3-201ENST00000368671 HHIPL1Q96JK4 782 aa13.33□□□□□ -0.28
CLRN3-201ENST00000368671 METTL22Q9BUU2 404 aaPredicted RBP13.33□□□□□ -0.28
CLRN3-201ENST00000368671 PODXL2Q9NZ53 605 aa13.33□□□□□ -0.28
CLRN3-201ENST00000368671 GGA1Q9UJY5 639 aa13.33□□□□□ -0.28
CLRN3-201ENST00000368671 MAP3K2Q9Y2U5 619 aa13.33□□□□□ -0.28
CLRN3-201ENST00000368671 PSME4Q14997 1843 aa13.32□□□□□ -0.28
CLRN3-201ENST00000368671 ADM5C9JUS6 153 aa13.32□□□□□ -0.28
CLRN3-201ENST00000368671 RIOK3O14730 519 aaKnown RBP13.32□□□□□ -0.28
CLRN3-201ENST00000368671 PDAP1Q13442 181 aaKnown RBP13.32□□□□□ -0.28
CLRN3-201ENST00000368671 KIF4BQ2VIQ3 1234 aa13.32□□□□□ -0.28
CLRN3-201ENST00000368671 KRT26Q7Z3Y9 468 aa13.32□□□□□ -0.28
CLRN3-201ENST00000368671 ANKRD18AQ8IVF6 992 aa13.32□□□□□ -0.28
CLRN3-201ENST00000368671 TSPYL6Q8N831 410 aa13.32□□□□□ -0.28
CLRN3-201ENST00000368671 TSR2Q969E8 191 aaKnown RBP13.32□□□□□ -0.28
CLRN3-201ENST00000368671 DCPSQ96C86 337 aaKnown RBP13.32□□□□□ -0.28
CLRN3-201ENST00000368671 TMEM106CQ9BVX2 250 aa13.32□□□□□ -0.28
CLRN3-201ENST00000368671 POLR2AP24928 1970 aaKnown RBP13.32□□□□□ -0.28
CLRN3-201ENST00000368671 MYH3P11055 1940 aa13.31□□□□□ -0.28
CLRN3-201ENST00000368671 HUNKP57058 714 aa13.31□□□□□ -0.28
CLRN3-201ENST00000368671 VIL1P09327 827 aaKnown RBP13.3□□□□□ -0.28
CLRN3-201ENST00000368671 PSEN1P49768 467 aa13.3□□□□□ -0.28
CLRN3-201ENST00000368671 BRPF1P55201 1214 aaPredicted RBP13.3□□□□□ -0.28
CLRN3-201ENST00000368671 CCDC184Q52MB2 194 aa13.3□□□□□ -0.28
CLRN3-201ENST00000368671 KSR2Q6VAB6 950 aa13.3□□□□□ -0.28
CLRN3-201ENST00000368671 CHMP4AQ9BY43 222 aa13.3□□□□□ -0.28
CLRN3-201ENST00000368671 GBA2Q9HCG7 927 aaPredicted RBP13.3□□□□□ -0.28
CLRN3-201ENST00000368671 GGA3Q9NZ52 723 aa13.3□□□□□ -0.28
CLRN3-201ENST00000368671 XDHP47989 1333 aa13.3□□□□□ -0.28
CLRN3-201ENST00000368671 PI4KAP2A4QPH2 592 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 IGKV5-2P06315 115 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 ATP2B4P23634 1241 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 CTSWP56202 376 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 NEXNQ0ZGT2 675 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 NOGQ13253 232 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 PI4KAP1Q8N8J0 262 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 C2orf69Q8N8R5 385 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 ZIC5Q96T25 663 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 STK31Q9BXU1 1019 aa13.29□□□□□ -0.28
CLRN3-201ENST00000368671 ASTN2O75129 1339 aaPredicted RBP13.29□□□□□ -0.28
CLRN3-201ENST00000368671 CCDC85CA6NKD9 419 aa13.28□□□□□ -0.28
CLRN3-201ENST00000368671 CA12O43570 354 aa13.28□□□□□ -0.28
CLRN3-201ENST00000368671 CWF19L2Q2TBE0 894 aaKnown RBP13.28□□□□□ -0.28
CLRN3-201ENST00000368671 TWISTNBQ3B726 338 aaPredicted RBP13.28□□□□□ -0.28
CLRN3-201ENST00000368671 RGMBQ6NW40 437 aa13.28□□□□□ -0.28
CLRN3-201ENST00000368671 RSBN1LQ6PCB5 846 aaPredicted RBP13.28□□□□□ -0.28
CLRN3-201ENST00000368671 SULF1Q8IWU6 871 aa13.28□□□□□ -0.28
CLRN3-201ENST00000368671 CDC5LQ99459 802 aaKnown RBP13.28□□□□□ -0.28
CLRN3-201ENST00000368671 ANGEL2Q5VTE6 544 aaKnown RBP13.27□□□□□ -0.29
CLRN3-201ENST00000368671 G2E3Q7L622 706 aa13.27□□□□□ -0.29
CLRN3-201ENST00000368671 AGBL3Q8NEM8 1001 aa13.27□□□□□ -0.29
CLRN3-201ENST00000368671 TTLL11Q8NHH1 800 aa13.27□□□□□ -0.29
CLRN3-201ENST00000368671 GREM2Q9H772 168 aa13.27□□□□□ -0.29
CLRN3-201ENST00000368671 NEURL1BA8MQ27 555 aa13.26□□□□□ -0.29
CLRN3-201ENST00000368671 FAM155AB1AL88 458 aaPredicted RBP13.26□□□□□ -0.29
CLRN3-201ENST00000368671 ZNF609O15014 1411 aa13.26□□□□□ -0.29
CLRN3-201ENST00000368671 ZNF646O15015 1829 aaPredicted RBP13.26□□□□□ -0.29
CLRN3-201ENST00000368671 ZNF157P51786 506 aaPredicted RBP13.26□□□□□ -0.29
CLRN3-201ENST00000368671 SCARF1Q14162 830 aa13.26□□□□□ -0.29
CLRN3-201ENST00000368671 WWC1Q8IX03 1113 aa13.26□□□□□ -0.29
CLRN3-201ENST00000368671 FBXW7Q969H0 707 aa13.26□□□□□ -0.29
CLRN3-201ENST00000368671 CDCA5Q96FF9 252 aa13.26□□□□□ -0.29
CLRN3-201ENST00000368671 CASP8AP2Q9UKL3 1982 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 MED23Q9ULK4 1368 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 USP17L3A6NCW0 530 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 USP17L4A6NCW7 530 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 WTIPA6NIX2 430 aaPredicted RBP13.25□□□□□ -0.29
CLRN3-201ENST00000368671 USP17L8P0C7I0 530 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 ZNF280AP59817 542 aaPredicted RBP13.25□□□□□ -0.29
CLRN3-201ENST00000368671 KIF23Q02241 960 aaPredicted RBP13.25□□□□□ -0.29
CLRN3-201ENST00000368671 CCDC27Q2M243 656 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 USP17L1Q7RTZ2 530 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 UBE3BQ7Z3V4 1068 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 PODNQ7Z5L7 613 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 SLC39A7Q92504 469 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 MCOLN1Q9GZU1 580 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 MYOZ2Q9NPC6 264 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 MINPP1Q9UNW1 487 aa13.25□□□□□ -0.29
CLRN3-201ENST00000368671 IGHMBP2P38935 993 aaKnown RBP13.24□□□□□ -0.29
CLRN3-201ENST00000368671 CCT4P50991 539 aaKnown RBP13.24□□□□□ -0.29
CLRN3-201ENST00000368671 DGKZQ13574 1117 aa13.24□□□□□ -0.29
CLRN3-201ENST00000368671 FAM161AQ3B820 660 aa13.24□□□□□ -0.29
CLRN3-201ENST00000368671 CCDC102AQ96A19 550 aa13.24□□□□□ -0.29
CLRN3-201ENST00000368671 MXD3Q9BW11 206 aa13.24□□□□□ -0.29
CLRN3-201ENST00000368671 BSDC1Q9NW68 430 aaPredicted RBP13.24□□□□□ -0.29
CLRN3-201ENST00000368671 SCAF8Q9UPN6 1271 aaKnown RBP13.24□□□□□ -0.29
CLRN3-201ENST00000368671 PAPPA2Q9BXP8 1791 aa13.23□□□□□ -0.29
CLRN3-201ENST00000368671 H7C1W4 665 aa13.23□□□□□ -0.29
CLRN3-201ENST00000368671 FLIIQ13045 1269 aa13.23□□□□□ -0.29
CLRN3-201ENST00000368671 GMLQ99445 158 aa13.23□□□□□ -0.29
CLRN3-201ENST00000368671 SALL2Q9Y467 1007 aaPredicted RBP13.23□□□□□ -0.29
CLRN3-201ENST00000368671 AKAP11Q9UKA4 1901 aa13.23□□□□□ -0.29
CLRN3-201ENST00000368671 IL16Q14005 1332 aa13.22□□□□□ -0.29
CLRN3-201ENST00000368671 SLC10A3P09131 477 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms