RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 ANKMY2Q8IV38 441 aa11.11□□□□□ -0.63
TPM3-213ENST00000368545 VEGFAP15692 232 aaPredicted RBP11.11□□□□□ -0.63
TPM3-213ENST00000368545 DCTN1Q14203 1278 aa11.11□□□□□ -0.63
TPM3-213ENST00000368545 PLEKHO1Q53GL0 409 aaPredicted RBP11.11□□□□□ -0.63
TPM3-213ENST00000368545 MCM10Q7L590 875 aa11.11□□□□□ -0.63
TPM3-213ENST00000368545 C5P01031 1676 aa11.1□□□□□ -0.63
TPM3-213ENST00000368545 CHL1O00533 1208 aa11.1□□□□□ -0.63
TPM3-213ENST00000368545 EXOC6Q8TAG9 804 aa11.1□□□□□ -0.63
TPM3-213ENST00000368545 SMARCC1Q92922 1105 aaPredicted RBP11.1□□□□□ -0.63
TPM3-213ENST00000368545 ACSBG1Q96GR2 724 aa11.1□□□□□ -0.63
TPM3-213ENST00000368545 BABAM1Q9NWV8 329 aa11.1□□□□□ -0.63
TPM3-213ENST00000368545 SLC27A5Q9Y2P5 690 aa11.1□□□□□ -0.63
TPM3-213ENST00000368545 KIF16BQ96L93 1317 aa11.1□□□□□ -0.63
TPM3-213ENST00000368545 ATP5J2-PTCD1G3V325 749 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 HMGB1P09429 215 aaKnown RBP11.09□□□□□ -0.63
TPM3-213ENST00000368545 KCNH2Q12809 1159 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 PUS10Q3MIT2 529 aaKnown RBP11.09□□□□□ -0.63
TPM3-213ENST00000368545 SMC4Q9NTJ3 1288 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 ADAMTS7Q9UKP4 1686 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 DPYDQ12882 1025 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 MORN1Q5T089 497 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 CCDC136Q96JN2 1154 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 CRBNQ96SW2 442 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 CEP126Q9P2H0 1117 aa11.09□□□□□ -0.63
TPM3-213ENST00000368545 CEMIPQ8WUJ3 1361 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 SLC4A3P48751 1232 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 AKAP4Q5JQC9 854 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 ARHGAP27Q6ZUM4 889 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 SAMD7Q7Z3H4 446 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 CNTNAP1P78357 1384 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 SLFNL1Q499Z3 407 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 C20orf194Q5TEA3 1177 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 C9orf131Q5VYM1 1079 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 RAPGEF4Q8WZA2 1011 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 NLRP2Q9NX02 1062 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 MAP10Q9P2G4 905 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 RABGEF1Q9UJ41 708 aa11.08□□□□□ -0.64
TPM3-213ENST00000368545 KDM3BQ7LBC6 1761 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 FOXN1O15353 648 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 VAMP4O75379 141 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 F12P00748 615 aaPredicted RBP11.07□□□□□ -0.64
TPM3-213ENST00000368545 MAP2K1Q02750 393 aaPredicted RBP11.07□□□□□ -0.64
TPM3-213ENST00000368545 AAMPQ13685 434 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 TWISTNBQ3B726 338 aaPredicted RBP11.07□□□□□ -0.64
TPM3-213ENST00000368545 C1orf141Q5JVX7 400 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 ZKSCAN2Q63HK3 967 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 ZNF530Q6P9A1 599 aaPredicted RBP11.07□□□□□ -0.64
TPM3-213ENST00000368545 FRAT1Q92837 279 aaPredicted RBP11.07□□□□□ -0.64
TPM3-213ENST00000368545 CCDC87Q9NVE4 849 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 SIPA1L3O60292 1781 aaPredicted RBP11.07□□□□□ -0.64
TPM3-213ENST00000368545 SCN11AQ9UI33 1791 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 CACNA1FO60840 1977 aa11.07□□□□□ -0.64
TPM3-213ENST00000368545 TATP17735 454 aaPredicted RBP11.06□□□□□ -0.64
TPM3-213ENST00000368545 PHTF2Q8N3S3 785 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 PLPP7Q8NBV4 271 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 SSH1Q8WYL5 1049 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 ZNF594Q96JF6 807 aaPredicted RBP11.06□□□□□ -0.64
TPM3-213ENST00000368545 TSPYL4Q9UJ04 414 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 SOS1Q07889 1333 aaPredicted RBP11.06□□□□□ -0.64
TPM3-213ENST00000368545 IPO8O15397 1037 aaKnown RBP11.06□□□□□ -0.64
TPM3-213ENST00000368545 RNF40O75150 1001 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 CLDN10P78369 228 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 FAM177A1Q8N128 213 aaPredicted RBP11.06□□□□□ -0.64
TPM3-213ENST00000368545 OGFOD1Q8N543 542 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 MEGF6O75095 1541 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 KCPQ6ZWJ8 1503 aa11.06□□□□□ -0.64
TPM3-213ENST00000368545 SWI5Q1ZZU3 235 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 RNF19BQ6ZMZ0 732 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 RNF135Q8IUD6 432 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 RRAGCQ9HB90 399 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 KIAA1551Q9HCM1 1747 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 PSEN2P49810 448 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 TAGLNQ01995 201 aaKnown RBP11.05□□□□□ -0.64
TPM3-213ENST00000368545 TAF7Q15545 349 aaPredicted RBP11.05□□□□□ -0.64
TPM3-213ENST00000368545 FTSJ3Q8IY81 847 aaKnown RBP11.05□□□□□ -0.64
TPM3-213ENST00000368545 IL17REQ8NFR9 667 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 SPG7Q9UQ90 795 aa11.05□□□□□ -0.64
TPM3-213ENST00000368545 Q3C1V9 767 aa11.04□□□□□ -0.64
TPM3-213ENST00000368545 ATF7IPQ6VMQ6 1270 aa11.04□□□□□ -0.64
TPM3-213ENST00000368545 TSPYL6Q8N831 410 aa11.04□□□□□ -0.64
TPM3-213ENST00000368545 C8orf58Q8NAV2 365 aa11.04□□□□□ -0.64
TPM3-213ENST00000368545 WBP1LQ9NX94 342 aa11.04□□□□□ -0.64
TPM3-213ENST00000368545 BLOC1S3Q6QNY0 202 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 NLGN1Q8N2Q7 840 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 ARHGAP45Q92619 1136 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 DCAF5Q96JK2 942 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 BCS1LQ9Y276 419 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 KDM6AO15550 1401 aaPredicted RBP11.03□□□□□ -0.64
TPM3-213ENST00000368545 DOT1LQ8TEK3 1739 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 CA12O43570 354 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 DZIP1LQ8IYY4 767 aaKnown RBP11.03□□□□□ -0.64
TPM3-213ENST00000368545 C1orf216Q8TAB5 229 aa11.03□□□□□ -0.64
TPM3-213ENST00000368545 C4BP0C0L5 1744 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 TAF1LQ8IZX4 1826 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 GLTPD2A6NH11 291 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 RNMTO43148 476 aaKnown RBP11.02□□□□□ -0.64
TPM3-213ENST00000368545 PRMT3O60678 531 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 TRIM27P14373 513 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 HTRA3P83110 453 aa11.02□□□□□ -0.64
TPM3-213ENST00000368545 TEFQ10587 303 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms