RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CHMP4AQ9BY43 222 aa17.91■□□□□ 0.46
VPS29-201ENST00000360579 CWC25Q9NXE8 425 aaPredicted RBP17.91■□□□□ 0.46
VPS29-201ENST00000360579 MYBBP1AQ9BQG0 1328 aaKnown RBP17.91■□□□□ 0.46
VPS29-201ENST00000360579 UBE2Q2LH0YL09 131 aa17.9■□□□□ 0.46
VPS29-201ENST00000360579 ABCB7O75027 752 aa17.9■□□□□ 0.46
VPS29-201ENST00000360579 TM4SF4P48230 202 aa17.9■□□□□ 0.46
VPS29-201ENST00000360579 SREBF2Q12772 1141 aa17.9■□□□□ 0.46
VPS29-201ENST00000360579 TTLL12Q14166 644 aaPredicted RBP17.9■□□□□ 0.46
VPS29-201ENST00000360579 CDC5LQ99459 802 aaKnown RBP17.9■□□□□ 0.46
VPS29-201ENST00000360579 MBIPQ9NS73 344 aa17.9■□□□□ 0.46
VPS29-201ENST00000360579 MYO3BQ8WXR4 1341 aa17.9■□□□□ 0.46
VPS29-201ENST00000360579 TBC1D8O95759 1140 aa17.89■□□□□ 0.45
VPS29-201ENST00000360579 DDX58O95786 925 aaKnown RBP17.89■□□□□ 0.45
VPS29-201ENST00000360579 PHAXQ9H814 394 aaKnown RBP17.89■□□□□ 0.45
VPS29-201ENST00000360579 MED23Q9ULK4 1368 aa17.89■□□□□ 0.45
VPS29-201ENST00000360579 GPR25O00155 361 aa17.88■□□□□ 0.45
VPS29-201ENST00000360579 CALD1Q05682 793 aaKnown RBP17.88■□□□□ 0.45
VPS29-201ENST00000360579 NBPF9Q3BBW0 867 aa17.88■□□□□ 0.45
VPS29-201ENST00000360579 FBXO46Q6PJ61 603 aaPredicted RBP17.88■□□□□ 0.45
VPS29-201ENST00000360579 MOB2Q70IA6 237 aa17.88■□□□□ 0.45
VPS29-201ENST00000360579 CCDC85AQ96PX6 553 aaPredicted RBP17.88■□□□□ 0.45
VPS29-201ENST00000360579 PSME4Q14997 1843 aa17.87■□□□□ 0.45
VPS29-201ENST00000360579 STRIP1Q5VSL9 837 aa17.87■□□□□ 0.45
VPS29-201ENST00000360579 METTL22Q9BUU2 404 aaPredicted RBP17.87■□□□□ 0.45
VPS29-201ENST00000360579 CFHR5Q9BXR6 569 aa17.87■□□□□ 0.45
VPS29-201ENST00000360579 BSDC1Q9NW68 430 aaPredicted RBP17.87■□□□□ 0.45
VPS29-201ENST00000360579 WNT10BO00744 389 aa17.86■□□□□ 0.45
VPS29-201ENST00000360579 ZNF853P0CG23 659 aa17.86■□□□□ 0.45
VPS29-201ENST00000360579 CTSWP56202 376 aa17.86■□□□□ 0.45
VPS29-201ENST00000360579 GNAI1P63096 354 aa17.86■□□□□ 0.45
VPS29-201ENST00000360579 DACT2Q5SW24 774 aa17.86■□□□□ 0.45
VPS29-201ENST00000360579 ARMC9Q7Z3E5 817 aa17.86■□□□□ 0.45
VPS29-201ENST00000360579 IFT57Q9NWB7 429 aa17.86■□□□□ 0.45
VPS29-201ENST00000360579 FKTNO75072 461 aa17.85■□□□□ 0.45
VPS29-201ENST00000360579 ALDH1A1P00352 501 aa17.85■□□□□ 0.45
VPS29-201ENST00000360579 PRAMEF18Q5VWM3 479 aa17.85■□□□□ 0.45
VPS29-201ENST00000360579 APOBEC3FQ8IUX4 373 aaKnown RBP17.85■□□□□ 0.45
VPS29-201ENST00000360579 COA1Q9GZY4 146 aa17.85■□□□□ 0.45
VPS29-201ENST00000360579 MINPP1Q9UNW1 487 aa17.85■□□□□ 0.45
VPS29-201ENST00000360579 ADAMTS8Q9UP79 889 aa17.85■□□□□ 0.45
VPS29-201ENST00000360579 SCAF8Q9UPN6 1271 aaKnown RBP17.85■□□□□ 0.45
VPS29-201ENST00000360579 CCT4P50991 539 aaKnown RBP17.84■□□□□ 0.45
VPS29-201ENST00000360579 JARID2Q92833 1246 aaPredicted RBP17.84■□□□□ 0.45
VPS29-201ENST00000360579 FBXW7Q969H0 707 aa17.84■□□□□ 0.45
VPS29-201ENST00000360579 GCC1Q96CN9 775 aa17.84■□□□□ 0.45
VPS29-201ENST00000360579 ELL2O00472 640 aaPredicted RBP17.83■□□□□ 0.44
VPS29-201ENST00000360579 CCDC30Q5VVM6 783 aa17.83■□□□□ 0.44
VPS29-201ENST00000360579 TTLL11Q8NHH1 800 aa17.83■□□□□ 0.44
VPS29-201ENST00000360579 LEMD3Q9Y2U8 911 aa17.83■□□□□ 0.44
VPS29-201ENST00000360579 INHBEP58166 350 aa17.82■□□□□ 0.44
VPS29-201ENST00000360579 NEXNQ0ZGT2 675 aa17.82■□□□□ 0.44
VPS29-201ENST00000360579 MKRN3Q13064 507 aaKnown RBP17.82■□□□□ 0.44
VPS29-201ENST00000360579 MAP3K2Q9Y2U5 619 aa17.82■□□□□ 0.44
VPS29-201ENST00000360579 SASH1O94885 1247 aa17.81■□□□□ 0.44
VPS29-201ENST00000360579 IGHMBP2P38935 993 aaKnown RBP17.81■□□□□ 0.44
VPS29-201ENST00000360579 PTPN12Q05209 780 aaKnown RBP17.81■□□□□ 0.44
VPS29-201ENST00000360579 MXD3Q9BW11 206 aa17.81■□□□□ 0.44
VPS29-201ENST00000360579 GREM2Q9H772 168 aa17.81■□□□□ 0.44
VPS29-201ENST00000360579 COL1A1P02452 1464 aaPredicted RBP17.81■□□□□ 0.44
VPS29-201ENST00000360579 LDLRAD1Q5T700 205 aa17.8■□□□□ 0.44
VPS29-201ENST00000360579 SPRYD7Q5W111 196 aa17.8■□□□□ 0.44
VPS29-201ENST00000360579 TTLL5Q6EMB2 1281 aa17.8■□□□□ 0.44
VPS29-201ENST00000360579 KSR2Q6VAB6 950 aa17.8■□□□□ 0.44
VPS29-201ENST00000360579 ANKRD2Q9GZV1 360 aa17.8■□□□□ 0.44
VPS29-201ENST00000360579 MANSC4A6NHS7 340 aaPredicted RBP17.79■□□□□ 0.44
VPS29-201ENST00000360579 WTIPA6NIX2 430 aaPredicted RBP17.79■□□□□ 0.44
VPS29-201ENST00000360579 PRKG1Q13976 671 aa17.79■□□□□ 0.44
VPS29-201ENST00000360579 INTS3Q68E01 1043 aaKnown RBP17.79■□□□□ 0.44
VPS29-201ENST00000360579 ANGEL1Q9UNK9 670 aaKnown RBP17.79■□□□□ 0.44
VPS29-201ENST00000360579 ZNF804BA4D1E1 1349 aa17.78■□□□□ 0.44
VPS29-201ENST00000360579 PI4KAP2A4QPH2 592 aa17.78■□□□□ 0.44
VPS29-201ENST00000360579 IGKV5-2P06315 115 aa17.78■□□□□ 0.44
VPS29-201ENST00000360579 KIAA0825Q8IV33 1275 aa17.78■□□□□ 0.44
VPS29-201ENST00000360579 PI4KAP1Q8N8J0 262 aa17.78■□□□□ 0.44
VPS29-201ENST00000360579 C8orf58Q8NAV2 365 aa17.78■□□□□ 0.44
VPS29-201ENST00000360579 UNCXA6NJT0 531 aa17.77■□□□□ 0.44
VPS29-201ENST00000360579 PPP1R12BO60237 982 aaPredicted RBP17.77■□□□□ 0.44
VPS29-201ENST00000360579 ZBTB48P10074 688 aaPredicted RBP17.77■□□□□ 0.44
VPS29-201ENST00000360579 SLC10A4Q96EP9 437 aa17.77■□□□□ 0.44
VPS29-201ENST00000360579 ZBED3Q96IU2 234 aaPredicted RBP17.77■□□□□ 0.44
VPS29-201ENST00000360579 STK31Q9BXU1 1019 aa17.77■□□□□ 0.44
VPS29-201ENST00000360579 PPP2R3BQ9Y5P8 575 aa17.77■□□□□ 0.44
VPS29-201ENST00000360579 APAF1O14727 1248 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 DLGAP5Q15398 846 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 MAP3K11Q16584 847 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 TXNRD3Q86VQ6 643 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 IFNL1Q8IU54 200 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 MPHOSPH8Q99549 860 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 DEFB129Q9H1M3 183 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 R3HDMLQ9H3Y0 253 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 TRIM17Q9Y577 477 aa17.76■□□□□ 0.43
VPS29-201ENST00000360579 NEURL1BA8MQ27 555 aa17.75■□□□□ 0.43
VPS29-201ENST00000360579 KCNJ4P48050 445 aa17.75■□□□□ 0.43
VPS29-201ENST00000360579 GTF2IP78347 998 aa17.75■□□□□ 0.43
VPS29-201ENST00000360579 HTTP42858 3142 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 H7C1W4 665 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 MYO1BO43795 1136 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 ITGA6P23229 1130 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 DDX10Q13206 875 aaKnown RBP17.74■□□□□ 0.43
VPS29-201ENST00000360579 CWF19L2Q2TBE0 894 aaKnown RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms